Metagenome-Assembled Genome: SRR18940297_bin.3_Met... - BioSample

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Metagenome-Assembled Genome: SRR18940297_bin.3_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114064795; SRA: ERS16048658

Organism: Gordonibacter urolithinfaciens
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Gordonibacter

Attributes

broad-scale environmental context	Human digestive system
collection date	2020
environmental medium	faeces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	gut metagenome of 19 non-habitual milk consumers with gastro-intestinal discomfort upon cow's milk consumption (NHMC) and 20 habitual milk consumers without GID (HMC), participating in a gut permeability and a milk load
sample name	SRR18940297_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T20:35:00Z
ENA-LAST-UPDATE	2023-07-13T20:35:00Z
External Id	SAMEA114064795
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T20:35:00Z
INSDC last update	2023-07-13T20:35:00Z
INSDC status	public
Submitter Id	SRR18940297_bin.3_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	87.57
completeness software	CheckM
contamination score	0.81
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN27917768
scientific_name	Gordonibacter urolithinfaciens
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Gordonibacter;s__Gordonibacter urolithinfaciens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR18940297 of study SRP372536.