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Metagenome-Assembled Genome: ERR9492491_bin.4_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114063773; SRA: ERS16047636
Organism
uncultured Anaerotruncus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection datenot provided
environmental mediumfaeces
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameAlterations in gut microbiota might contribute to uremic toxicity and immune dysregulation in patients with end-stage renal disease. Hemodialysis patients are prone to infection and higher mortality following sepsis. The virulence factors in the gut metagenome have not been well studied in hemodialysis patients, which could be employed by microorganisms to successfully thrive and flourish in their hosts. In this study, we performed shotgun metagenomics sequencing on fecal DNA collected from 16 control subjects and 24 hemodialysis patients.
sample nameERR9492491_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T20:34:57Z
ENA-LAST-UPDATE2023-07-13T20:34:57Z
External IdSAMEA114063773
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T20:34:57Z
INSDC last update2023-07-13T20:34:57Z
INSDC statuspublic
Submitter IdERR9492491_bin.4_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score87.36
completeness softwareCheckM
contamination score0.69
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA13854778
scientific_nameuncultured Anaerotruncus sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9492491 of study ERP136768.

BioProject
PRJEB62821
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114063773
ID:
36479835

BioProject Nucleotide

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