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Metagenome-Assembled Genome: ERR10960912_bin.11_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114061479; SRA: ERS16045345
Organism
uncultured Neisseria sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationKenya
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameShotgun metagenomics from Kenyan infants
sample nameERR10960912_bin.11_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:55Z
ENA-LAST-UPDATE2023-07-13T16:22:55Z
External IdSAMEA114061479
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:55Z
INSDC last update2023-07-13T16:22:55Z
INSDC statuspublic
Submitter IdERR10960912_bin.11_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score50.6
completeness softwareCheckM
contamination score0.34
geographic location (latitude)-0.023636
geographic location (longitude)37.910405
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA112710959
scientific_nameuncultured Neisseria sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10960912 of study ERP137488.

BioProject
PRJEB62839
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114061479
ID:
36477572

BioProject Nucleotide

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