Metagenome-Assembled Genome: ERR10960841_bin.7_Met... - BioSample

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Metagenome-Assembled Genome: ERR10960841_bin.7_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114061340; SRA: ERS16045206

Organism: uncultured Citrobacter sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; environmental samples

Attributes

broad-scale environmental context	Human digestive system
collection date	2018
environmental medium	faeces
geographic location	Kenya
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Shotgun metagenomics from Kenyan infants
sample name	ERR10960841_bin.7_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T16:22:54Z
ENA-LAST-UPDATE	2023-07-13T16:22:54Z
External Id	SAMEA114061340
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T16:22:54Z
INSDC last update	2023-07-13T16:22:54Z
INSDC status	public
Submitter Id	ERR10960841_bin.7_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.97
completeness software	CheckM
contamination score	0.64
geographic location (latitude)	-0.023636
geographic location (longitude)	37.910405
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA112710888
scientific_name	uncultured Citrobacter sp.
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10960841 of study ERP137488.