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Metagenome-Assembled Genome: SRR3967025_bin.4_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA112958017; SRA: ERS14953438
Organism
uncultured Pseudomonadaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; environmental samples
Attributes
broad-scale environmental contextAquatic
collection date2011-01-10
environmental mediumDeep Atlantic Ocean
geographic locationAtlantic Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMarine microbial communities from the Deep Atlantic Ocean - MP0440 metagenome
sample nameSRR3967025_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-24
ENA-LAST-UPDATE2023-04-24
External IdSAMEA112958017
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-04-24T16:16:29Z
INSDC last update2023-04-24T16:16:29Z
INSDC statuspublic
Submitter IdSRR3967025_bin.4_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score89.85
completeness softwareCheckM
contamination score3.3
geographic location (latitude)-22.97
geographic location (longitude)-36.95
local environmental contextMarine
metagenomic sourcemarine metagenome
sample derived fromSAMN05422188
scientific_nameuncultured Pseudomonadaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome-assembled genome assembled from the metagenomic run SRR3967025 of study SRP080069.

BioProject
PRJEB26150
Retrieve all samples from this project

Submission
EBI; 2023-04-29
Accession:
SAMEA112958017
ID:
34438089

BioProject Nucleotide

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