Metagenome-assembled genome: E02__bin305

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2016
broad-scale environmental context	host-associated habitat
local-scale environmental context	host-associated habitat
environmental medium	caecal content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	MetaChick
sample name	E02__bin305
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-06-17
ENA-LAST-UPDATE	2022-06-17
External Id	SAMEA110136358
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-06-17T16:20:06Z
INSDC last update	2022-06-17T16:20:06Z
INSDC status	public
Submitter Id	E02__bin305
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT default parameters
binning software	MetaBAT v2.12.1
completeness score	70.22
completeness software	checkm v1.1.3
contamination score	0
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	chicken gut metagenome
sample derived from	ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221

Metagenome-assembled genome: E02__bin305
Metagenome-assembled genome: E02__bin305

biosample
Metagenome-assembled genome: E15__bin229
Metagenome-assembled genome: E15__bin229

biosample
MAG: uncultured Ruthenibacterium sp. isolate BRZ_PB__bin102, whole genome shotgu...
MAG: uncultured Ruthenibacterium sp. isolate BRZ_PB__bin102, whole genome shotgun sequencing project
gi|2261492404|emb|CALXBO000000000.1 BO010000000

Nucleotide
MAG: uncultured Clostridia bacterium isolate BRZ_GA__bin43, whole genome shotgun...
MAG: uncultured Clostridia bacterium isolate BRZ_GA__bin43, whole genome shotgun sequencing project
gi|2261448811|emb|CALVHR000000000.1 HR010000000

Nucleotide
MAG: Candidatus Avimonas merdigallinarum isolate E08__bin202, whole genome shotg...
MAG: Candidatus Avimonas merdigallinarum isolate E08__bin202, whole genome shotgun sequencing project
gi|2261511246|emb|CALWIG000000000.1 IG010000000

Nucleotide

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