Metagenome-assembled genome: BRZ_II__bin91

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Result Filters

Organism: Limosilactobacillus ingluviei
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus

Attributes

collection date	2016
broad-scale environmental context	host-associated habitat
local-scale environmental context	host-associated habitat
environmental medium	caecal content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	MetaChick
sample name	BRZ_II__bin91
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-06-17
ENA-LAST-UPDATE	2022-06-17
External Id	SAMEA110134623
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-06-17T16:20:20Z
INSDC last update	2022-06-17T16:20:20Z
INSDC status	public
Submitter Id	BRZ_II__bin91
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT default parameters
binning software	MetaBAT v2.12.1
completeness score	97.91
completeness software	checkm v1.1.3
contamination score	0.29
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	chicken gut metagenome
sample derived from	ERS4542021
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542021

Metagenome-assembled genome: BRZ_II__bin91
Metagenome-assembled genome: BRZ_II__bin91

biosample
Metagenome-assembled genome: BRZ_FH__bin24
Metagenome-assembled genome: BRZ_FH__bin24

biosample
Metagenome-assembled genome: BRZ_BB__bin35
Metagenome-assembled genome: BRZ_BB__bin35

biosample
MAG: Candidatus Coprocola pullicola isolate BRZ_NV__bin24, whole genome shotgun ...
MAG: Candidatus Coprocola pullicola isolate BRZ_NV__bin24, whole genome shotgun sequencing project
gi|2261555556|emb|CALWPA000000000.1 PA010000000

Nucleotide
MAG: uncultured Oscillospiraceae bacterium isolate E06__bin180, whole genome sho...
MAG: uncultured Oscillospiraceae bacterium isolate E06__bin180, whole genome shotgun sequencing project
gi|2261311869|emb|CALXGF000000000.1 GF010000000

Nucleotide

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