Metagenome-assembled genome: BRZ_BB__bin35

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Bacteroidales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples

Attributes

collection date	2016
broad-scale environmental context	host-associated habitat
local-scale environmental context	host-associated habitat
environmental medium	caecal content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	MetaChick
sample name	BRZ_BB__bin35
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-06-17
ENA-LAST-UPDATE	2022-06-17
External Id	SAMEA110134201
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-06-17T16:20:25Z
INSDC last update	2022-06-17T16:20:25Z
INSDC status	public
Submitter Id	BRZ_BB__bin35
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT default parameters
binning software	MetaBAT v2.12.1
completeness score	87.33
completeness software	checkm v1.1.3
contamination score	0.71
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	chicken gut metagenome
sample derived from	ERS4542276
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542276

Metagenome-assembled genome: BRZ_BB__bin35
Metagenome-assembled genome: BRZ_BB__bin35

biosample
MAG: Candidatus Coprocola pullicola isolate BRZ_NV__bin24, whole genome shotgun ...
MAG: Candidatus Coprocola pullicola isolate BRZ_NV__bin24, whole genome shotgun sequencing project
gi|2261555556|emb|CALWPA000000000.1 PA010000000

Nucleotide
MAG: uncultured Oscillospiraceae bacterium isolate E06__bin180, whole genome sho...
MAG: uncultured Oscillospiraceae bacterium isolate E06__bin180, whole genome shotgun sequencing project
gi|2261311869|emb|CALXGF000000000.1 GF010000000

Nucleotide
MAG: uncultured Desulfovibrio sp. isolate BRZ_KF__bin108, whole genome shotgun s...
MAG: uncultured Desulfovibrio sp. isolate BRZ_KF__bin108, whole genome shotgun sequencing project
gi|2261524970|emb|CALUYG000000000.1 YG010000000

Nucleotide
MAG: uncultured Firmicutes bacterium isolate E08__bin337, whole genome shotgun s...
MAG: uncultured Firmicutes bacterium isolate E08__bin337, whole genome shotgun sequencing project
gi|2261474115|emb|CALYAV000000000.1 AV010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample