ERS11712897

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Result Filters

Organism: Bifidobacterium breve
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

collection date	2018-05-09
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB52406
sample name	HRS-HS13-bin-116
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA110030099
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:01Z
INSDC last update	2023-04-13T16:27:01Z
INSDC status	public
Submitter Id	HRS-HS13-bin-116
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	54.29
completeness software	checkm
contamination score	1.05
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS11712897
scientific_name	Bifidobacterium breve
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

ERS11712897
ERS11712897

biosample
ERS11712860
ERS11712860

biosample
MAG: Opitutus sp. GAS368 isolate HRS-HS13-bin-113, whole genome shotgun sequenci...
MAG: Opitutus sp. GAS368 isolate HRS-HS13-bin-113, whole genome shotgun sequencing project
gi|2491888679|emb|CALQBI000000000.2 BI020000000

Nucleotide
ERS11712854
ERS11712854

biosample
MAG: Bifidobacterium breve isolate HRS-ES8-bin-26, whole genome shotgun sequenci...
MAG: Bifidobacterium breve isolate HRS-ES8-bin-26, whole genome shotgun sequencing project
gi|2491908269|emb|CALPPJ000000000.2 PJ020000000

Nucleotide

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