MIGS Cultured Bacterial/Archaeal sample from Campy... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Campylobacter rectus RM3267

Identifiers: BioSample: SAMN00000716; Sample name: HMP048-454 Sample; SRA: SRS001044

Organism: Campylobacter rectus RM3267
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter rectus

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2513000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Campylobacter rectus RM3267, CCUG 20446
geographic location	not determined
source material identifiers	CCUG 20446, ATCC 33238
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	RM3267
environmental package	missing
isolation source	oral
finishing strategy (depth of coverage)	Level 2: High-Quality Draft26x;89
project_type	Reference Genome
misc_param: HMP body site	Gingival crevices
nucleic acid extraction	not determined
assembly	Newbler v. 1.1.03.24-64-7
misc_param: HMP supersite	oral
sequencing method	not determined
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf

Description

Campylobacter rectus is a gram-negative, microaerophilic, rod-shaped bacterium found in the gingival crevice. The bacterium is motile and has a flagellum and surface layer (S-layer). It has been associated with periodontitis and the S-layer is a candidate as a cause of the bacterium's virulence.

Keywords: GSC:MIxS;MIGS:6.0