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BioSample

National Center for Biotechnology Information

Result Filters

MAG I3-5_bin-002 from assembly ERS4600411

Identifiers: BioSample: SAMEA6946764; SRA: ERS4656647

Organism: uncultured Rhodoblastus sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhodoblastaceae; Rhodoblastus; environmental samples

Attributes

ammonium	0.665225345085648
collection date	2017-07-05
dissolved organic carbon	2206.36599032529
broad-scale environmental context	lentic water body
local-scale environmental context	pond
environmental medium	water
geographic location	Canada
investigation type	metagenome
isolation source	pond
nitrate	0.51608824463873
nitrite	0
nitrogen	50.4687042629599
oxygen	2.18
phosphate	1.12665497191786
project name	microbes in stratified freshwaters
sample name	I3-5_bin-002
temperature	13.5
total phosphorus	0.003196253654948
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:03:40Z
External Id	SAMEA6946764
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:03:40Z
INSDC status	public
Submitter Id	I3-5_bin-002
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	96.31
completeness software	checkm
conductivity.	0.0362
contamination score	1.54
ferric iron	2.5072
ferrous iron	4.8
geographic location (depth)	0
geographic location (latitude)	55.22566666666667
geographic location (longitude)	-77.69583333333334
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Rhodoblastus
iron	7.3
metagenomic OTU	anoxic_mOTU_3389
metagenomic source	pond metagenome
region	Kuujjuarapik-Whapmagoostui
sample derived from	ERS4600411
sample owner	Mariana Kluge
scientific_name	uncultured Rhodoblastus sp.
sequencing method	NovaSeq
site name	I3
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water