| broad-scale environmental context | aquatic biome |
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| collected by | Victor Beltran |
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| collection date | 2021-02-16 |
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| environmental medium | dinoflagellate culture |
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| geographic location | Australia |
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| host life stage | not applicable |
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| host | Symbiodinium pilosum |
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| host sex | not applicable |
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| host taxonomy ID | 2952 (2952) |
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| identified by | Carlos Alvarez Roa |
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| investigation type | metagenome-assembled genome |
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| isolation source | Dinoflagellate: Symbiodinium pilosum |
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| tissue | WHOLE ORGANISM |
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| project name | ASG |
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| sample name | 06e1b965-8529-4e92-b1e1-f71056b100d9 |
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| specimen voucher | NA |
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| 16S recovered | Yes |
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| 16S recovery software | PROKKA (version 1.14.5) |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-12-20T15:39:41Z |
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| ENA-LAST-UPDATE | 2023-12-20T15:39:41Z |
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| External Id | SAMEA115049605 |
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| GAL | University of Derby |
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| GAL_sample_id | NOT PROVIDED |
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| INSDC center name | Tree of Life Programme |
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| INSDC first public | 2023-12-20T15:39:41Z |
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| INSDC last update | 2023-12-20T15:39:41Z |
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| INSDC status | public |
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| MAG coverage software | Minimap2 (version 2.24-r1122) |
|---|
| Submitter Id | 06e1b965-8529-4e92-b1e1-f71056b100d9 |
|---|
| assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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| assembly software | metaMDBG |
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| barcoding center | UNIVERSITY OF DERBY |
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| binning parameters | coverage; graph |
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| binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7) |
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| collecting institution | Australian Institute of Marine Science |
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| completeness score | 100 |
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| completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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| contamination score | 0.0 |
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| geographic location (latitude) | not collected |
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| geographic location (longitude) | not collected |
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| geographic location (region and locality) | Arlington Reef |
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| habitat | NA |
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| identifier_affiliation | Australian Insitute of Marine Science |
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| local environmental context | marine biome |
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| metagenomic source | dinoflagellate metagenome |
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| number of standard tRNAs extracted | 34 |
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| original collection date | 2002-01-01 |
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| original collection location | Australia | Arlington Reef |
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| sample derived from | SAMEA115049568 |
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| scientific_name | Parvicellaceae bacterium |
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| sequencing method | Pacbio Sequel II |
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| specimen_id | UDUK0000214 |
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| tRNA extraction software | PROKKA (version 1.14.5) |
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| taxonomic classification | GTDB-TK (version 2.3.2); GTDB (release 214) |
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| taxonomic identity marker | taxonomic novelty determined using RED |
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| tolid | pySymPilo7.Parvicellaceae_1 |
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