Genome sequencing and assembly of Echinicola sp. H... - BioSample

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Genome sequencing and assembly of Echinicola sp. H1 (Bacteroidetes) with a high biotech potential.

Identifiers: BioSample: SAMN29861939; Sample name: Echi1; SRA: SRS17180021

Organism: Echinicola sp. H1
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola; unclassified Echinicola

Package: MIGS: cultured bacteria/archaea, sediment; version 6.0

Attributes

isolation source	hepatopancreas of Tylos ponticus
collection date	2021-05-26
geographic location	Italy: Sant Agostino, Civitavecchia
latitude and longitude	42.159167 N 11.734444 E
strain	H1
depth	1-5 cm
elevation	0
broad-scale environmental context	hepatopancreas of Tylos ponticus (Crustacea, Isopoda)
local-scale environmental context	hepatopancreas of Tylos ponticus
environmental medium	hepatopancreas from Tylos ponticus
isolation and growth condition	NA +NaCl
number of replicons	1
reference for biomaterial	no reference

Description

A deep understanding of halotolerant/halophilic bacteria with the ability to degrade polymers has broad relevance to biotechnological sectors, including marine biomass conversion and plastic biodegradation. Here, we investigated a carotenoid-pigmented and halotolerant bacterium, Echinicola sp. strain H1, isolated from the hepatopancreas of Tylos ponticus (associated with beached leaves of the seagrass Posidonia oceanica). We report the draft genome sequence of Echinicola sp. H1 obtained with Illumina platform. The genome was assembled de novo and was used to functionally annotate Echinicola sp. H1. This genome sequence provided essential information for future transcriptomic studies, particularly under salt stress conditions.

Keywords: GSC:MIxS;MIGS:6.0