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BioSample

National Center for Biotechnology Information

Identifiers: BioSample: SAMEA115107639; Sample name: SRR1522971_concoct_76_1705335399; SRA: ERS17743356

Organism: uncultured Methylocucumis sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylocucumis; environmental samples

Attributes

broad-scale environmental context	water
collection date	2008-09
geographic location	Brazil
environmental medium	amazon
investigation type	metagenome-assembled genome
project name	Illumina HiSeq 2500 sequencing: Metagenomic analysis from lakes in Amazon river
isolation source	freshwater metagenome
assembly software	MetaSPades_v3.14.1
sample derived from	SAMN02924044
geographic location (longitude)	-19.76 DD
binning parameters	default
contamination score	0.22 %
ENA-FIRST-PUBLIC	2024-01-15T16:34:33Z
ENA-LAST-UPDATE	2024-01-15T16:34:33Z
completeness software	CheckM2_v1.0.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Methylocucumis sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker	multi-marker approach
completeness score	89.45 %
geographic location (latitude)	-50.96 DD
scientific_name	uncultured Methylocucumis sp.
local environmental context	river
metagenomic source	freshwater metagenome
sequencing method	Illumina HiSeq 2500
ENA-FIRST-PUBLIC	2024-01-15
ENA-LAST-UPDATE	2024-01-15