U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Alphaproteobacteria bacterium UBA1485 genome recovered from ERX552342

Identifiers
BioSample: SAMN06450649; Sample name: Alphaproteobacteria bacterium UBA1485; SRA: SRS2031024
Organism
Alphaproteobacteria bacterium UBA1485
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA1485
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX552342 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated86.77%
contamination_estimated0.81%
environmental_sampletrue
genome_coverage14.6
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR594384.
Description

Uncultivated genome recovered from an assembly of the ERX552342 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06450649
ID:
6450649

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center