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HeLaFucci, live-cell RNA-seq

Identifiers
BioSample: SAMN41483305; Sample name: live-cellRNA-seq_HeLaFucci; SRA: SRS21381422
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Package
Human; version 1.0
Attributes
isolatesubcellular mRNA from single HeLa/Fucci cells obtained by nanoelectrokinetic aspiration
agenot applicable
biomaterial providerRIKEN BRC
collection datenot applicable
geographic locationnot applicable
sexfemale
tissuecervix
cell lineHeLa/Fucci(SA)2
diseasecervical carcinoma
sample typeRNA
source material identifiers2
Description

Protocols: HeLa/Fucci(SA)2 cells (RCB2867, Riken BRC) were maintained in Dulbecco’s Modified Eagle Medium (Nacalai Tesque) containing 10% fetal bovine serum (gibco) and 1% penicillin-streptomycin (Sigma-Aldrich). We employed a micromanipulation system integrated with an inverted microscope, featuring two micromanipulators: PatchMan NP2 (Eppendorf) and TransferMan 4r (Eppendorf) to position a glass capillary (HUMANIX, CT-0P) proximity to a cellular membrane. One micromanipulator was equipped with a capillary holder (Pipette holder, Narishige, H-7), positioned at a 75° angle. The glass capillary was filled with 1 μL of sucrose solution (260 mM Sucrose and 20 mM HEPES) at the tip as an inner solution. A platinum wire of 200-μm in diameter (Niraco, PT-351265) was immersed in the sucrose solution. The another manipulator was equipped with a platinum electrode of 1 mm in diameter (Niraco, PT-351481). The platinum electrode immersed in a sucrose mixture medium approximately 5 mm away from the microscope's field of view. Each platinum wire was linked to a source meter (Keithley, 2410-C) for real-time monitoring of current values and application of the voltage via an RS-232 C serial communication. To detect the contacting of a tip of the glass capillary to the cellular membrane, a constant voltage of 0.3 V was maintained before the sampling. The contact was detected by damping of the ionic current. Upon contact, intracellular products were collected into the capillary using square pulse conditions of 2 Hz, 2 V spacing, -10 V pulse, and 10% duty ratio for 5 s for HeLa/Fucci cells. Subsequently, the capillary was swiftly withdrawn from the medium and detached from the capillary holder to collect the extracted RNA.

BioProjects
PRJNA1116837 Caenorhabditis elegans
Retrieve all samples from this project

PRJNA1114388
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Submission
Riken, Kotaro Torii; 2024-05-22
Accession:
SAMN41483305
ID:
41483305

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