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TARA_20131008T1215Z_205_EVENT_PUMP_SRF_(5m)_SEQ-(100L)_W0.22-3_B110000879

Identifiers
BioSample: SAMEA4398094; SRA: ERS1309543
Organism
marine metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
depth5
broad-scale environmental contextPolar Biome
local-scale environmental context[SRF] surface water layer (ENVO:00010504)
environmental mediumwater (ENVO:00002006), including particulate matter (ENVO:01000060) such as planktonic material (ENVO:01000063)
environmental packagewater
project nameTara Oceans Expedition (2009-2013)
sample nameTARA_B110000879
size-fraction lower threshold0.22
size-fraction upper threshold3
temperature-0.48046
Chlorophyll Sensor1.7892
CitationTara Oceans Consortium, Coordinators & Tara Oceans Expedition, Participants. Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA. doi:10.1594/PANGAEA.842197 (2015) (https://dx.doi.org/10.1594/PANGAEA.842197)
ENA first public2019-10-15
ENA last update2016-08-25
ENA-CHECKLISTERC000030
Event Date/Time End2013-10-08T15:19:00
External IdSAMEA4398094
INSDC center aliasGSC
INSDC center nameGenoscope
INSDC first public2019-10-15T04:04:43Z
INSDC last update2016-08-25T12:13:18Z
INSDC statuspublic
Latitude End72.4769
Longitude End-71.9329
Salinity Sensor31.995275
Submitter IdTARA_B110000879
environment (feature) further detailsdiscrete depth within the epipelagic zone (ENVO:00000209) at the top of the photic zone (ENVO:00000209), <50 m from a strong peak in chlorophyll fluorescence
event date/time start2013-10-08T12:15:00
event labelTARA_20131008T1215Z_205_EVENT_PUMP
further detailshttp://store.pangaea.de/Projects/TARA-OCEANS/Logsheets_Wetlab/TARA_20131008Z_205_WETLAB_BACT.pdf
last update date2016-04-23Z
latitude start72.4693
longitude start-71.892
marine region[AO] Arctic Ocean (MRGID:1906)
nitrate sensor3.891253
oxygen sensor353.31105
protocol descriptionIn the size fraction W0.22-3 micrometres, the sample material was pre-filtered on 3-micrometres, using a 142-mm-diameter Millipore polycarbonate membrane (ref:TSTP14250), and concentrated on 0.22-micrometres, using a 142-mm-diameter Millipore polyethersulfone Express Plus membrane filter (ref:GPWP14250). A volume of 100 Litres was filtered and the 0.22-micrometre-pore-size filter was packaged in a sterile Falcon tube (50 mL), treated with the addition of 10 mL of RNA-Later, labelled with a barcode identification sticker and stored on board in a freezer at -20 degree Celsius. Note 1: Latex or nitril gloves were used for this protocol. Note 2: All containers, filter holders and tubing were washed with 0.1% bleach, rinsed twice with fresh water and rinsed again twice with the pre-filtered sample material. All tweezers are kept clean with ethanol. Note 3: A peristaltic pump (Masterflex, EW-77410-10) was used with a flow rate rendering a pressure of ca. 10-15 psi. Note 4: When the filtration rate decreased considerably, filters were replaced. All filters from one filtration were stored in the same sample container. A total of 2 replicates were prepared and sent for later analysis to the Institute of Marine Science (CSIC), Barcelona, Spain.
protocol labelSEQ-(100L)_W0.22-3
sample collection devicehigh volume peristaltic pump [HVP-PUMP]
sample material labelTARA_205_SRF_0.22-3
sample statusThis version can be used to provide data discovery services
sampling campaignTARA_20130921Z
sampling platformSV Tara
sampling stationTARA_205
Description

This sample (TARA_B110000879) was collected at station TARA_205 during campaign TARA_20130921Z of the Tara Oceans expedition (2009-2013), using a high volume peristaltic pump [HVP-PUMP]. The sampling event (TARA_20131008T1215Z_205_EVENT_PUMP) occurred at position latitudeN=72.4693 and longitudeE=-71.892, on date/time=2013-10-08T12:15:00, at a depth of 3-7 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [SRF] surface water layer (ENVO:00010504). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(100L)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity and metagenomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000880.

BioProjects
PRJEB36283 BTT
Retrieve all samples from this project

PRJEB9740 BMI. Shotgun Sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for prokaryotes.
Retrieve all samples from this project

PRJEB6610 ARG
Retrieve all samples from this project

Submission
EBI; 2019-10-22
Accession:
SAMEA4398094
ID:
13081617

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