U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TARA_20130604T0905Z_158_Combined-EVENTS_CAST_MES_(651m)_SEQ-(100L)_W0.22-3_B110001454

Identifiers
BioSample: SAMEA4397004; SRA: ERS1308453
Organism
marine metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
depth651
broad-scale environmental contextPolar Biome
local-scale environmental context[MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213)
environmental mediumwater (ENVO:00002006), including particulate matter (ENVO:01000060) such as planktonic material (ENVO:01000063)
environmental packagewater
project nameTara Oceans Expedition (2009-2013)
sample nameTARA_B110001454
size-fraction lower threshold0.22
size-fraction upper threshold3
temperature0.22498
Chlorophyll Sensor0
CitationTara Oceans Consortium, Coordinators & Tara Oceans Expedition, Participants. Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA. doi:10.1594/PANGAEA.842197 (2015) (https://dx.doi.org/10.1594/PANGAEA.842197)
ENA first public2019-10-15
ENA last update2016-08-25
ENA-CHECKLISTERC000030
Event Date/Time End2013-06-04T17:21:00
External IdSAMEA4397004
INSDC center aliasGSC
INSDC center nameGenoscope
INSDC first public2019-10-15T04:04:43Z
INSDC last update2016-08-25T11:48:08Z
INSDC statuspublic
Latitude End67.2688
Longitude End0.3537
Salinity Sensor34.90349
Submitter IdTARA_B110001454
environment (feature) further detailsdiscrete depth between 400-800 m, within the mesopelagic zone (ENVO:00000213) within the aphotic zone (ENVO:00000210)
event date/time start2013-06-04T09:05:00
event labelTARA_20130604T0905Z_158_Combined-EVENTS_CAST
further detailshttp://store.pangaea.de/Projects/TARA-OCEANS/Logsheets_Wetlab/TARA_20130603Z_158_WETLAB_BACT.pdf
last update date2016-04-23Z
latitude start67.1675
longitude start0.2177
marine region[AO] Arctic Ocean (MRGID:1906)
nitrate sensor14.950381
oxygen sensor295.31095
protocol descriptionIn the size fraction W0.22-3 micrometres, the sample material was pre-filtered on 3-micrometres, using a 142-mm-diameter Millipore polycarbonate membrane (ref:TSTP14250), and concentrated on 0.22-micrometres, using a 142-mm-diameter Millipore polyethersulfone Express Plus membrane filter (ref:GPWP14250). A volume of 100 Litres was filtered and the 0.22-micrometre-pore-size filter was packaged in a sterile Falcon tube (50 mL), treated with the addition of 10 mL of RNA-Later, labelled with a barcode identification sticker and stored on board in a freezer at -20 degree Celsius. Note 1: Latex or nitril gloves were used for this protocol. Note 2: All containers, filter holders and tubing were washed with 0.1% bleach, rinsed twice with fresh water and rinsed again twice with the pre-filtered sample material. All tweezers are kept clean with ethanol. Note 3: A peristaltic pump (Masterflex, EW-77410-10) was used with a flow rate rendering a pressure of ca. 10-15 psi. Note 4: When the filtration rate decreased considerably, filters were replaced. All filters from one filtration were stored in the same sample container. A total of 2 replicates were prepared and sent for later analysis to the Institute of Marine Science (CSIC), Barcelona, Spain.
protocol labelSEQ-(100L)_W0.22-3
sample collection deviceRosette Vertical Sampling System [RVSS]
sample material labelTARA_158_MES_0.22-3
sample statusThis version can be used to provide data discovery services
sampling campaignTARA_20130519Z
sampling platformSV Tara
sampling stationTARA_158
Description

This sample (TARA_B110001454) was collected at station TARA_158 during campaign TARA_20130519Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20130604T0905Z_158_Combined-EVENTS_CAST) occurred at position latitudeN=67.1675 and longitudeE=0.2177, on date/time=2013-06-04T09:05:00, at a depth of 642-660 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(100L)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity and metagenomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110001455.

BioProjects
PRJEB9740 BMI. Shotgun Sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for prokaryotes.
Retrieve all samples from this project

PRJEB6610 ARG
Retrieve all samples from this project

Submission
EBI; 2019-10-22
Accession:
SAMEA4397004
ID:
13081590

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center