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TARA_20130525T0907Z_155_EVENT_PUMP_DCM_(40m)_SEQ-(100L)_W0.22-3_B110000008

Identifiers
BioSample: SAMEA4396496; SRA: ERS1307945
Organism
marine metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
depth40
broad-scale environmental contextWesterlies Biome
local-scale environmental context[DCM] deep chlorophyll maximum layer (ENVO:01000326)
environmental mediumwater (ENVO:00002006), including particulate matter (ENVO:01000060) such as planktonic material (ENVO:01000063)
environmental packagewater
project nameTara Oceans Expedition (2009-2013)
sample nameTARA_B110000008
size-fraction lower threshold0.22
size-fraction upper threshold3
temperature10.79018
Chlorophyll Sensor1.21266
CitationTara Oceans Consortium, Coordinators & Tara Oceans Expedition, Participants. Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA. doi:10.1594/PANGAEA.842197 (2015) (https://dx.doi.org/10.1594/PANGAEA.842197)
ENA first public2019-10-15
ENA last update2016-08-25
ENA-CHECKLISTERC000030
Event Date/Time End2013-05-25T11:45:00
External IdSAMEA4396496
INSDC center aliasGSC
INSDC center nameGenoscope
INSDC first public2019-10-15T04:04:43Z
INSDC last update2016-08-25T11:35:08Z
INSDC statuspublic
Latitude End54.525
Longitude End-16.689
Salinity Sensor35.33502
Submitter IdTARA_B110000008
environment (feature) further detailsdiscrete depth within the epipelagic zone (ENVO:00000209) within the photic zone (ENVO:00000209), near the base of a marine epipelagic wind mixed layer (ENVO:01000061)
event date/time start2013-05-25T09:07:00
event labelTARA_20130525T0907Z_155_EVENT_PUMP
further detailshttp://store.pangaea.de/Projects/TARA-OCEANS/Logsheets_Wetlab/TARA_20130524Z_155_WETLAB_BACT.pdf
last update date2016-04-23Z
latitude start54.5451
longitude start-16.7943
marine region[NAO] North Atlantic Ocean (MRGID:1912)
nitrate sensor6.951238
oxygen sensor266.369875
protocol descriptionIn the size fraction W0.22-3 micrometres, the sample material was pre-filtered on 3-micrometres, using a 142-mm-diameter Millipore polycarbonate membrane (ref:TSTP14250), and concentrated on 0.22-micrometres, using a 142-mm-diameter Millipore polyethersulfone Express Plus membrane filter (ref:GPWP14250). A volume of 100 Litres was filtered and the 0.22-micrometre-pore-size filter was packaged in a sterile Falcon tube (50 mL), treated with the addition of 10 mL of RNA-Later, labelled with a barcode identification sticker and stored on board in a freezer at -20 degree Celsius. Note 1: Latex or nitril gloves were used for this protocol. Note 2: All containers, filter holders and tubing were washed with 0.1% bleach, rinsed twice with fresh water and rinsed again twice with the pre-filtered sample material. All tweezers are kept clean with ethanol. Note 3: A peristaltic pump (Masterflex, EW-77410-10) was used with a flow rate rendering a pressure of ca. 10-15 psi. Note 4: When the filtration rate decreased considerably, filters were replaced. All filters from one filtration were stored in the same sample container. A total of 2 replicates were prepared and sent for later analysis to the Institute of Marine Science (CSIC), Barcelona, Spain.
protocol labelSEQ-(100L)_W0.22-3
sample collection devicehigh volume peristaltic pump [HVP-PUMP]
sample material labelTARA_155_DCM_0.22-3
sample statusThis version can be used to provide data discovery services
sampling campaignTARA_20130519Z
sampling platformSV Tara
sampling stationTARA_155
Description

This sample (TARA_B110000008) was collected at station TARA_155 during campaign TARA_20130519Z of the Tara Oceans expedition (2009-2013), using a high volume peristaltic pump [HVP-PUMP]. The sampling event (TARA_20130525T0907Z_155_EVENT_PUMP) occurred at position latitudeN=54.5451 and longitudeE=-16.7943, on date/time=2013-05-25T09:07:00, at a depth of 38-42 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [DCM] deep chlorophyll maximum layer (ENVO:01000326). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(100L)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity and metagenomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000009.

BioProjects
PRJEB9740 BMI. Shotgun Sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for prokaryotes.
Retrieve all samples from this project

PRJEB6610 ARG
Retrieve all samples from this project

Submission
EBI; 2019-10-22
Accession:
SAMEA4396496
ID:
13081587

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