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High quality draft genome assembly of Hirundo rustica rustica

Identifiers
BioSample: SAMN09657529; Sample name: Chelidonia; SRA: SRS3593202
Organism
Hirundo rustica rustica
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo; Hirundo rustica
Package
Model organism or animal; version 1.0
Attributes
isolateChelidonia
development stageadult
sexfemale
tissueblood
biomaterial providerNicola Saino
birth date2016
collected byNicola Saino
collection date2017-06
geographic locationItaly: Milan
health statehealthy
sub speciesrustica
Description

The barn swallow (Hirundo rustica) is a migratory bird that has been the focus of a huge number of ecological, behavioural and, more recently, genetic studies. To facilitate further genomic and population genetics studies, we present here a draft genome sequence for the European subspecies (Hirundo rustica rustica). SMRT sequencing from Pacific Biosciences in conjunction with the newly developed Direct Label and Stain (DLS) optical mapping by Bionano Genomics was employed in order to provide the first high-quality draft genome sequence for a scientifically and culturally important species of migratory bird.

BioProjects
PRJNA713843 Hirundo rustica isolate:bHirRus1
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PRJNA636192 Hirundo rustica isolate:bHirRus1
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PRJNA636191 Hirundo rustica isolate:bHirRus1
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PRJNA481100 Hirundo rustica rustica isolate:Chelidonia
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Submission
University of Milan, Matteo Chiara; 2018-07-14
Accession:
SAMN09657529
ID:
9657529

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