Uncultivated Thiobacillus denitrificans UBA5601 ge... - BioSample - NCBI

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Uncultivated Thiobacillus denitrificans UBA5601 genome recovered from SRX211342

Identifiers: BioSample: SAMN06456202; Sample name: Thiobacillus denitrificans UBA5601; SRA: SRS2032606

Organism: Thiobacillus denitrificans
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Thiobacillaceae; Thiobacillus

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	Canada: Syncrude, Ft. McMurray, Alberta
isolate	UBA5601
isolation source	waste water
metagenome source	hydrocarbon metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX211342 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	78.37%
contamination_estimated	1.44%
environmental_sample	true
genome_coverage	147.67
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the hydrocarbon metagenome reads: SRR636569.

Description: Uncultivated genome recovered from an assembly of the SRX211342 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06456202
ID:: 6456202

BioProject SRA Nucleotide

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Uncultivated Thiobacillus denitrificans UBA5601 genome recovered from SRX211342
Uncultivated Thiobacillus denitrificans UBA5601 genome recovered from SRX211342

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Chain F, METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT
Chain F, METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT
gi|11514430|pdb|1E6V|F

Protein
Chain B, METHYL-COENZYME M REDUCTASE I BETA SUBUNIT
Chain B, METHYL-COENZYME M REDUCTASE I BETA SUBUNIT
gi|12084787|pdb|1E6V|B

Protein

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