A Multinational Exploration on the Establishment o... - BioSample

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Result Filters

Organism: hospital metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

collection date	2023-03-17
geographic location	Lebanon
elevation	37
broad-scale environmental context	urban biome
local-scale environmental context	hospital
environmental medium	anthropogenic environmental material
environmental package	built environment
geographic location	Lebanon:LB-BA:Beirut
geographic location	Lebanon
host subject id	BHH2
sample name	qiita_sid_14921:14921.BHH2
sample type	surface of toilet
ENA first public	2024-10-07
ENA-CHECKLIST	ERC000011
INSDC center name	UCSDMI
INSDC status	public
Submitter Id	qiita_sid_14921:14921.BHH2
abx_amikacin	no
abx_amoxicillin_clavulanacid	no
abx_ampicillin	no
abx_cefepime	no
abx_ceftazidime_avibactam	no
abx_ceftriaxone	no
abx_ciprofloxacin	no
abx_clarithromycin	no
abx_flucloxacilin	no
abx_imipenem	yes
abx_linezolid	no
abx_meropenem	yes
abx_metrodinazol	no
abx_piperacillin_tazobactam	yes
abx_rifaximin	no
abx_teicoplanin	no
abx_trimetoprim_sulfamethoxazole	yes
abx_vancomycin	yes
anonymized_name	BHH2
city	Beirut
collection_timestamp	2023-03-17
dna_extracted	TRUE
empo_1	Free-living
empo_2	Free-living (non-saline)
empo_3	Solid (non-saline)
empo_4	Surface (non-saline)
extraction_date	2023-03-28
hospital	Hotel-Dieu de France
latitude	33.893791
longitude	35.501778
physical_specimen_location	not provided
physical_specimen_remaining	FALSE
qiita_sample_type	surface
scientific_name	hospital metagenome
storage_days	11
toilet_id	BHH2
ward	oncology
ward_type	high exposure
ward_type_subdivision	high

Description: toilet bowl surface sample taken via COPAN ESwab collected from hospital center

A Multinational Exploration on the Establishment of Homogenized High-Risk Microb...
A Multinational Exploration on the Establishment of Homogenized High-Risk Microbial Communities in Toilets in the Clinical Setting; 14921.BHH2

biosample
phosphodiesterase family protein [Streptococcus sp. SR1]
phosphodiesterase family protein [Streptococcus sp. SR1]
gi|577038604|gb|EUC80874.1||gnl|WGS |HMPREF1518_0362

Protein
iron chelate uptake ABC transporter, FeCT family, permease protein [Streptococcu...
iron chelate uptake ABC transporter, FeCT family, permease protein [Streptococcus sp. SR1]
gi|577038601|gb|EUC80871.1||gnl|WGS |HMPREF1518_0371

Protein
Akysis prashadi voucher UMMZ:245488 recombination activating gene 1 (rag1) gene,...
Akysis prashadi voucher UMMZ:245488 recombination activating gene 1 (rag1) gene, partial cds
gi|177539122|gb|EU490960.1|

Nucleotide
Lamprologus ornatipinnis isolate 1903 NADH dehydrogenase subunit 2 (ND2) gene, c...
Lamprologus ornatipinnis isolate 1903 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial
gi|124013895|gb|EF191111.1|

Nucleotide

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