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BioSample

National Center for Biotechnology Information

Organism: uncultured Friedmanniella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Nocardioidaceae; Friedmanniella; environmental samples

Attributes

broad-scale environmental context	Thallus of Peltigera malacea lichen
collection date	2013-08-16
environmental medium	lichen thallus
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Metagenomics of the Peltigera-Nostoc symbiosis
sample name	public_SRR11456913_metawrap_bin.19
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR11456913_metawrap_bin.19
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	98.19
completeness software	CheckM_v1.1.3
contamination score	0.17
geographic location (latitude)	58.00000000
geographic location (longitude)	-111.00000000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN14483417
scientific_name	uncultured Friedmanniella sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR11456913 of study SRP254726.

Metagenome-assembled genome: public_SRR11456913_metawrap_bin.19
Metagenome-assembled genome: public_SRR11456913_metawrap_bin.19

biosample
Choloepus didactylus isolate 189i cytochrome b (Cytb) gene, partial cds; mitocho...
Choloepus didactylus isolate 189i cytochrome b (Cytb) gene, partial cds; mitochondrial
gi|2076008188|gb|MW752317.1|

Nucleotide
neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus]
neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus]
gi|295789078|ref|NP_001171431.1|

Protein
leucine-rich repeat-containing protein 14 [Homo sapiens]
leucine-rich repeat-containing protein 14 [Homo sapiens]
gi|436408716|ref|NP_001258965.1|

Protein

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