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aquifer water

Identifiers
BioSample: SAMEA111280531; SRA: ERS13378128
Organism
aquifer metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
broad-scale environmental contextgroundwater (ENVO:01001004)
collection date2015-09-15
depth2-20
elevation173
environmental mediumwater
geographic locationFrance
investigation typemimarks-survey
project nameImpact of urban runoffs discharged in aquifers by stormwater infiltration systems (PRJEB55755) ANR FROG
sample nameIUT-Amont-J5
ENA first public2024-09-02
ENA-CHECKLISTERC000024
External IdSAMEA111280531
INSDC center nameMicrobial ecology
INSDC last update2022-09-02T15:54:52Z
INSDC statuspublic
SIS transit time levelquicker
SIS vadose zone thickness levelshallower
Submitter IdIUT-Amont-J5
geographic location (latitude)45.78722207
geographic location (longitude)4.88203279
geographic location (region and locality)Auvergne-Rhone-Alpes administrative region, Rhone department, Villeurbanne city
local environmental contextaquifer (ENVO:00012408)
pcr primersILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
scientific_nameaquifer metagenome
sequencing methodSequencing by synthesis (Illumina MiSeq Illumina V3)
target geneThiopurine S-methyltransferase (tpm)
target subfragment200-235 bp, including the VPLCGK and YDRAAM conserved domains
water environmental packagewater
Description

Upstream aquifer water sample from the la Doua (IUT) Stormwater Infiltration System (SIS)

Submission
EBI; 2024-09-03
Accession:
SAMEA111280531
ID:
43476752

BioProject SRA

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