aquifer water

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Organism: aquifer metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

broad-scale environmental context	groundwater (ENVO:01001004)
collection date	2015-09-15
depth	2-20
elevation	211
environmental medium	water
geographic location	France
investigation type	mimarks-survey
project name	Impact of urban runoffs discharged in aquifers by stormwater infiltration systems (PRJEB55755) ANR FROG
sample name	RAQ-Aval-J10
ENA first public	2024-09-02
ENA-CHECKLIST	ERC000024
External Id	SAMEA111280563
INSDC center name	Microbial ecology
INSDC last update	2022-09-02T15:54:52Z
INSDC status	public
SIS transit time level	quicker
SIS vadose zone thickness level	deeper
Submitter Id	RAQ-Aval-J10
geographic location (latitude)	45.74136292
geographic location (longitude)	4.98055348
geographic location (region and locality)	Auvergne-Rhone-Alpes administrative region, Rhone department, Chassieu town
local environmental context	aquifer (ENVO:00012408)
pcr primers	ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
scientific_name	aquifer metagenome
sequencing method	Sequencing by synthesis (Illumina MiSeq Illumina V3)
target gene	Thiopurine S-methyltransferase (tpm)
target subfragment	200-235 bp, including the VPLCGK and YDRAAM conserved domains
water environmental package	water

Description: Downstream aquifer water sample from the Raquin (RAQ) Stormwater Infiltration System (SIS)

aquifer water
aquifer water

biosample
KRTHB2 (0)
Books
uncharacterized protein SAPIO_CDS1023 [Scedosporium apiospermum]
uncharacterized protein SAPIO_CDS1023 [Scedosporium apiospermum]
gi|1027058994|ref|XP_016645953.1|

Protein
Lamiales tRNA-Leu gene, partial sequence; trnL-trnF intergenic spacer, complete ...
Lamiales tRNA-Leu gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe gene, partial sequence; chloroplast.
PopSet: 1785471127

PopSet
Pectinoidea 16S ribosomal RNA gene, partial sequence; mitochondrial.
Pectinoidea 16S ribosomal RNA gene, partial sequence; mitochondrial.
PopSet: 340814219

PopSet

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