aquifer water

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Result Filters

Organism: aquifer metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

broad-scale environmental context	groundwater (ENVO:01001004)
collection date	2015-09-15
depth	2-20
elevation	199
environmental medium	water
geographic location	France
investigation type	mimarks-survey
project name	Impact of urban runoffs discharged in aquifers by stormwater infiltration systems (PRJEB55755) ANR FROG
sample name	DJR-Aval-J10
ENA first public	2024-09-02
ENA-CHECKLIST	ERC000024
External Id	SAMEA111280482
INSDC center name	Microbial ecology
INSDC last update	2022-09-02T15:54:51Z
INSDC status	public
SIS transit time level	slower
SIS vadose zone thickness level	deeper
Submitter Id	DJR-Aval-J10
geographic location (latitude)	45.73600091
geographic location (longitude)	4.95853660
geographic location (region and locality)	Auvergne-Rhone-Alpes administrative region, Rhone department, Chassieu town
local environmental context	aquifer (ENVO:00012408)
pcr primers	ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
scientific_name	aquifer metagenome
sequencing method	Sequencing by synthesis (Illumina MiSeq Illumina V3)
target gene	Thiopurine S-methyltransferase (tpm)
target subfragment	200-235 bp, including the VPLCGK and YDRAAM conserved domains
water environmental package	water