MIMAG Metagenome-assembled Genome sample from Parv... - BioSample

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Result Filters

Identifiers: BioSample: SAMN39963234; Sample name: Lejia_A_Parvibaculum_lavamentivorans_63_12; SRA: SRS20513577

Organism: Parvibaculum sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Parvibaculaceae; Parvibaculum; unclassified Parvibaculum

Attributes

isolation source	Sediment layer of the Laguna Lejia terrace
collection date	2018-11
geographic location	Chile: Laguna Lejia, Altiplano, Andes
latitude and longitude	23.5 S 67.7 W
pH	8.213333333333333
derived from	SAMN39953875
isolate	LejiaA_63_12
depth	0-7 cm
elevation	4,325 m.a.s.l.
broad-scale environmental context	lake sediment biome (ENVO:00000546)
local-scale environmental context	saline sediment environment (ENVO:01001050)
environmental medium	saline sediment environment (ENVO:01001050)
sample type	metagenomic assembly
metagenome source	sediment metagenome
Chlorine (ppm)	11240.6476218498
Sodium (ppm)	17120.7635286889
Magnesium (ppm)	5181.4818142516
Potassium (ppm)	1175.62397284205
Calcium (ppm)	671.657405481018
Sulfur from sulfate (ppm)	10894.6854954009
Boron (ppm)	276.04111760753
Fluorine (ppm)	61.9140423971059
Lithium (ppm)	27.5256017167611
Nitrogen from nitrate (ppm)	25.6496312992068
Bismuth (ppm)	15.0052338183556
Bromine (ppm)	5.8992372178165
Strontium (ppm)	3.02483736913942
Arsenic (ppm)	6.77253110306553
Vanadium (ppm)	1.44002430472163
Rubidium (ppm)	3.02483736913942
Molybdenum (ppm)	0.447311124650467
Magnesium calcite (%)	31.4
Albite (%)	44.5
Andesine (%)	0
Anorthite (%)	0
Anorthoclase (%)	0
Muscovite (%)	16
Gypsum (%)	4.8
Halite (%)	3.3
Quartz (%)	0
metagenomic	1
environmental-sample	1

Description

In depth column, depths start from the base of the lake terrace (0 cm) and ascend vertically (up to 95 cm)

Keywords: GSC:MIxS;MIMAG:6.0

MIMAG Metagenome-assembled Genome sample from Parvibaculum sp.
MIMAG Metagenome-assembled Genome sample from Parvibaculum sp.

biosample
Elatine gussonei voucher DE-Soo-41693 petA-psbJ intergenic spacer, partial seque...
Elatine gussonei voucher DE-Soo-41693 petA-psbJ intergenic spacer, partial sequence; and photosystem II protein J (psbJ) gene, partial cds; chloroplast
gi|1109485616|gb|KX818191.1|

Nucleotide
Elatine gussonei voucher DE-soo-37479a cytochrome b6/f complex subunit VIII (pet...
Elatine gussonei voucher DE-soo-37479a cytochrome b6/f complex subunit VIII (petN) gene, partial cds; petN-psbM intergenic spacer, complete sequence; photosystem II protein M (psbM) gene, complete cds; psbM-trnD intergenic spacer, complete sequence; and tRNA-Asp (trnD) gene, partial sequence; chloroplast
gi|1109485472|gb|KX818136.1|

Nucleotide
Elatine hexandra voucher DE-soo-37694 acetyl-CoA carboxylase beta subunit (accD)...
Elatine hexandra voucher DE-soo-37694 acetyl-CoA carboxylase beta subunit (accD) gene, partial cds; accD-psaI intergenic spacer, complete sequence; and photosystem I subunit VIII (psaI) gene, partial cds; chloroplast
gi|1109485511|gb|KX818149.1|

Nucleotide
Elatine hungarica voucher DE-soo-37484 petA-psbJ intergenic spacer, partial sequ...
Elatine hungarica voucher DE-soo-37484 petA-psbJ intergenic spacer, partial sequence; and photosystem II protein J (psbJ) gene, partial cds; chloroplast
gi|1109485600|gb|KX818183.1|

Nucleotide

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