Metagenome-Assembled Genome: SRR13099460_bin.7_Met... - BioSample

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Metagenome-Assembled Genome: SRR13099460_bin.7_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114402930; SRA: ERS16391620

Organism: Prevotella bivia
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella

Attributes

broad-scale environmental context	human excretory system
collection date	2018
environmental medium	urine
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	urine metagenome
project name	An investigation to characterize the urinary metagenome of patients suffering from interstitial cystitis (IC). Samples were inactivated immediately after first-morning urine was voided. A metagenomics analysis used clinically could elucidate whether patients are diagnosed with non-infectious IC prematurely due to insufficient testing methods, unable to fully investigate all known bacteria, fungi, and viruses.
sample name	SRR13099460_bin.7_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR13099460_bin.7_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	88.7
completeness software	CheckM
contamination score	0.76
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	urethra
metagenomic source	urine metagenome
sample derived from	SAMN16860696
scientific_name	Prevotella bivia
sequencing method	NextSeq 550
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella bivia
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR13099460 of study SRP293595.