Metagenome-Assembled Genome: ERR9492489_bin.18_Met... - BioSample

Metagenome-Assembled Genome: ERR9492489_bin.18_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114063756; SRA: ERS16047619

Organism: Pyramidobacter piscolens
cellular organisms; Bacteria; Synergistota; Synergistia; Synergistales; Dethiosulfovibrionaceae; Pyramidobacter

Attributes

broad-scale environmental context	Human digestive system
collection date	not provided
environmental medium	faeces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Alterations in gut microbiota might contribute to uremic toxicity and immune dysregulation in patients with end-stage renal disease. Hemodialysis patients are prone to infection and higher mortality following sepsis. The virulence factors in the gut metagenome have not been well studied in hemodialysis patients, which could be employed by microorganisms to successfully thrive and flourish in their hosts. In this study, we performed shotgun metagenomics sequencing on fecal DNA collected from 16 control subjects and 24 hemodialysis patients.
sample name	ERR9492489_bin.18_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T20:34:55Z
ENA-LAST-UPDATE	2023-07-13T20:34:55Z
External Id	SAMEA114063756
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T20:34:55Z
INSDC last update	2023-07-13T20:34:55Z
INSDC status	public
Submitter Id	ERR9492489_bin.18_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA13854776
scientific_name	Pyramidobacter piscolens
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Pyramidobacter;s__Pyramidobacter piscolens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9492489 of study ERP136768.

BioProject: PRJEB62821
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Submission: EBI; 2023-07-17

Accession:: SAMEA114063756
ID:: 36479818

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Metagenome-Assembled Genome: ERR9492489_bin.18_MetaWRAP_v1.3_MAG

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