U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: SRR3967025_bin.7_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA112958020; SRA: ERS14953441
Organism
uncultured Pseudoalteromonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; environmental samples
Attributes
broad-scale environmental contextAquatic
collection date2011-01-10
environmental mediumDeep Atlantic Ocean
geographic locationAtlantic Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMarine microbial communities from the Deep Atlantic Ocean - MP0440 metagenome
sample nameSRR3967025_bin.7_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-24
ENA-LAST-UPDATE2023-04-24
External IdSAMEA112958020
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-04-24T16:16:29Z
INSDC last update2023-04-24T16:16:29Z
INSDC statuspublic
Submitter IdSRR3967025_bin.7_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score81.65
completeness softwareCheckM
contamination score2.16
geographic location (latitude)-22.97
geographic location (longitude)-36.95
local environmental contextMarine
metagenomic sourcemarine metagenome
sample derived fromSAMN05422188
scientific_nameuncultured Pseudoalteromonas sp.
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales;f__Pseudoalteromonadaceae;g__Pseudoalteromonas;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome-assembled genome assembled from the metagenomic run SRR3967025 of study SRP080069.

BioProject
PRJEB26150
Retrieve all samples from this project

Submission
EBI; 2023-04-29
Accession:
SAMEA112958020
ID:
34438092

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center