MGBC129590

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Result Filters

Organism: uncultured Peptococcaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Peptococcaceae; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC129590
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:42:30Z
ENA-LAST-UPDATE	2023-02-03T00:42:30Z
External Id	SAMEA112402994
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:42:30Z
INSDC last update	2023-02-03T00:42:30Z
INSDC status	public
Submitter Id	MGBC129590
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	90.24
completeness software	CheckM
contamination score	2.34
geographic location (latitude)	46.776635
geographic location (longitude)	-71.270671
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERR3957837
scientific_name	uncultured Peptococcaceae bacterium
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC129590
MGBC129590

biosample
Mesangiospermae ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (r...
Mesangiospermae ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast.
PopSet: 167891280

PopSet
MAG TPA_asm: uncultured Peptococcaceae bacterium isolate MGBC165973, whole genom...
MAG TPA_asm: uncultured Peptococcaceae bacterium isolate MGBC165973, whole genome shotgun sequencing project
gi|2470410297|tpe|CARPCP000000000.1 CP010000000

Nucleotide
Profile neighbors for GEO Profiles (Select 108379412) (38)
GEO Profiles
MAG: uncultured Peptococcaceae bacterium isolate 6732_HOM_VAC_s129.ctg000173l_hi...
MAG: uncultured Peptococcaceae bacterium isolate 6732_HOM_VAC_s129.ctg000173l_hifiasm_large MAG genome assembly, chromosome: 1
gi|2729058704|emb|OZ007004.1|

Nucleotide

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