Metagenome-assembled genome: SRR10258545_bin.4_met... - BioSample

Metagenome-assembled genome: SRR10258545_bin.4_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111491455; SRA: ERS13585466

Organism: Prevotella bivia
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella

Attributes

broad-scale environmental context	Human reproductive system
collection date	2017-01-01
environmental medium	Vagina
geographic location	China
investigation type	metagenome-assembled genome
isolation source	vaginal metagenome
project name	to provide a comprehensive investigation describing the relationship between high-risk HPV16 infection and vaginal microbiome.
sample name	SRR10258545_bin.4_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-10-19
ENA-LAST-UPDATE	2022-10-19
External Id	SAMEA111491455
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-10-19T12:28:17Z
INSDC last update	2022-10-19T12:28:17Z
INSDC status	public
Submitter Id	SRR10258545_bin.4_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.32
completeness software	CheckM
contamination score	0.51
geographic location (latitude)	30.26
geographic location (longitude)	120.19
local environmental context	Vagina
metagenomic source	vaginal metagenome
sample derived from	SAMN12997184
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella bivia
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR10258545 of study SRP225101.

BioProject: PRJEB55657
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Submission: EBI; 2022-10-20

Accession:: SAMEA111491455
ID:: 31379902

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Metagenome-assembled genome: SRR10258545_bin.4_metaWRAP_v1.3_MAG

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