Metagenome-assembled genome: SRR12830916_bin.11_me... - BioSample

Metagenome-assembled genome: SRR12830916_bin.11_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111346136; SRA: ERS13443689

Organism: Prevotella bivia
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella

Attributes

broad-scale environmental context	Human reproductive system
collection date	not provided
environmental medium	Vagina
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	vaginal metagenome
project name	WGS was conducted on DNA obtained from 20 vaginal swabs collected at four-time points over a period of 12 months from five randomly selected African-American (AA) women. The baseline visit (first-time point) included all women who were diagnosed with asymptomatic BV and were untreated. All subjects were tested subsequently once every two months and received a course of metronidazole for each episode of BV during the 12 months period.
sample name	SRR12830916_bin.11_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-09-12
ENA-LAST-UPDATE	2022-09-12
External Id	SAMEA111346136
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-09-12T16:20:53Z
INSDC last update	2022-09-12T16:20:53Z
INSDC status	public
Submitter Id	SRR12830916_bin.11_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	97.8
completeness software	CheckM
contamination score	0.18
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Vagina
metagenomic source	vaginal metagenome
sample derived from	SAMN16449331
scientific_name	Prevotella bivia
sequencing method	Illumina HiSeq 1500
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella bivia
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12830916 of study SRP287478.

BioProject: PRJEB53566
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Submission: EBI; 2022-09-13

Accession:: SAMEA111346136
ID:: 30822424

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Metagenome-assembled genome: SRR12830916_bin.11_metaWRAP_v1.3_MAG

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