Metagenome-assembled genome: 9FxmkMbM2y_bin.4.MAG

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Result Filters

Organism: uncultured Propionimicrobium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionimicrobium; environmental samples

Attributes

collection date	2014-05-20
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	9FxmkMbM2y_bin.4.MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-10
ENA-LAST-UPDATE	2022-08-10
External Id	SAMEA110089042
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-08-10T16:27:25Z
INSDC last update	2022-08-10T16:27:25Z
INSDC status	public
Submitter Id	9FxmkMbM2y_bin.4.MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	95.47
completeness software	CheckM v1.1.2
contamination score	95.47
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human skin metagenome
sample derived from	SAMN03159751
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647118.

BioProject: PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

Metagenome-assembled genome: 9FxmkMbM2y_bin.4.MAG
Metagenome-assembled genome: 9FxmkMbM2y_bin.4.MAG

biosample
Homo sapiens SET and MYND domain containing 1 (SMYD1), transcript variant 2, mRN...
Homo sapiens SET and MYND domain containing 1 (SMYD1), transcript variant 2, mRNA
gi|1676325009|ref|NM_001330364.2|

Nucleotide
polyhomeotic-like protein 1 isoform h [Homo sapiens]
polyhomeotic-like protein 1 isoform h [Homo sapiens]
gi|2327432617|ref|NP_001400674.1|

Protein

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