MIGS Cultured Bacterial/Archaeal sample from Esche... - BioSample

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Result Filters

Organism: Escherichia coli 96.0932
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Attributes

broad-scale environmental context	terrestrial biome [ENVO:00000446]
serotype	O157:H7
collection date	1996
isolation and growth condition	missing
host	cow
latitude and longitude	missing
project name	Genomic anatomy of E.coli O157:H7 outbreaks: Insights into pathogenome evolution and population dynamics during the time-course of infection.
investigation type	bacteria_archaea
host taxonomy ID	9913 (9913)
local-scale environmental context	livestock-associated habitat [ENVO:02000005]
phenotype	stx1neg, stx2pos, eaepos
geographic location	USA:Texas
reference for biomaterial	missing
environmental medium	feces [ENVO:00002003]
body product	stool
environmental package	missing
number of replicons	missing
strain	96.0932
sample size (ul)	missing
NCBI TAXON_ID	1005413
finishing strategy (depth of coverage)	102.06
misc feature: metabolism	missing
nucleic acid extraction	missing
subspecific genetic lineage: clade	missing
assembly	Velvet 1.2.01
sequencing method	Illumina