TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7442273; SRA: ERS5200477

Organism: Clostridia bacterium UC5.1-1E11
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; unclassified Clostridia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1697531664_MAG42
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:01Z
ENA-LAST-UPDATE	2020-10-15T09:17:02Z
External Id	SAMEA7442273
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:01Z
INSDC last update	2020-10-15T09:17:02Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1697531664_MAG42
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	99.33
completeness software	CheckM;v1.0.13
contamination score	0.30
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408100,SAMN09408222,SAMN09408332,SAMN09408720,SAMN09409081,SAMN09409226,SAMN09409423,SAMN09410710,SAMN09411159,SAMN09411979,SAMN09412200,SAMN09412219,SAMN09413566,SAMN09415080,SAMN09415429,SAMN09416173,SAMN09416530,SAMN09416572,SAMN09416903,SAMN09418221,SAMN09418816,SAMN09418903,SAMN09418981,SAMN09420240,SAMN09420268,SAMN09420530,SAMN09420797,SAMN09421148
scientific_name	Clostridia bacterium UC5.1-1E11
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1697531664: SRR7561781,SRR7566538,SRR7558491,SRR7559684,SRR7559287,SRR7568726,SRR7560807,SRR7564859,SRR7569416,SRR7563555,SRR7558169,SRR7560352,SRR7562166,SRR7559252,SRR7563128,SRR7559792,SRR7559723,SRR7568524,SRR7559157,SRR7563809,SRR7559098,SRR7558911,SRR7568555,SRR7559394,SRR7557395,SRR7559737,SRR7558074,SRR7560131

Submission: EBI; 2021-02-02

Accession:: SAMEA7442273
ID:: 17753116

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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