TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7431022; SRA: ERS5189234

Organism: Clostridia bacterium UC5.1-1E11
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; unclassified Clostridia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1287560689_MAG92
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:09:59Z
ENA-LAST-UPDATE	2020-10-15T06:24:58Z
External Id	SAMEA7431022
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:09:59Z
INSDC last update	2020-10-15T06:24:58Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1287560689_MAG92
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	97.15
completeness software	CheckM;v1.0.13
contamination score	1.36
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408435,SAMN09409266,SAMN09409679,SAMN09410134,SAMN09410853,SAMN09410930,SAMN09411512,SAMN09411672,SAMN09411782,SAMN09411973,SAMN09412011,SAMN09412094,SAMN09412190,SAMN09412596,SAMN09412606,SAMN09413766,SAMN09414901,SAMN09415897,SAMN09415965,SAMN09417597,SAMN09418583,SAMN09418984,SAMN09419638,SAMN09420059
scientific_name	Clostridia bacterium UC5.1-1E11
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1287560689: SRR7560076,SRR7568683,SRR7560889,SRR7566827,SRR7559613,SRR7569625,SRR7569375,SRR7557228,SRR7562865,SRR7559468,SRR7561404,SRR7561531,SRR7557751,SRR7561364,SRR7569855,SRR7568126,SRR7561796,SRR7556987,SRR7562046,SRR7562274,SRR7566005,SRR7567366,SRR7565508,SRR7566282

Submission: EBI; 2021-02-02

Accession:: SAMEA7431022
ID:: 17741727

BioSample

National Center for Biotechnology Information

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