TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7450175; SRA: ERS5208368

Organism: Clostridia bacterium UC5.1-1E11
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; unclassified Clostridia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	female
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1982356849_MAG89
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:00Z
ENA-LAST-UPDATE	2020-10-15T11:19:24Z
External Id	SAMEA7450175
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:00Z
INSDC last update	2020-10-15T11:19:24Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1982356849_MAG89
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	96.29
completeness software	CheckM;v1.0.13
contamination score	0.69
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408525,SAMN09408716,SAMN09408911,SAMN09408926,SAMN09408926,SAMN09409131,SAMN09409229,SAMN09409798,SAMN09409857,SAMN09410029,SAMN09410224,SAMN09410344,SAMN09410483,SAMN09410493,SAMN09411273,SAMN09411345,SAMN09411635,SAMN09412047,SAMN09412116,SAMN09412699,SAMN09412741,SAMN09413479,SAMN09413690,SAMN09413832,SAMN09415421,SAMN09415507,SAMN09415544,SAMN09415957,SAMN09416427,SAMN09416561,SAMN09417045,SAMN09417250,SAMN09417394,SAMN09417419,SAMN09417492,SAMN09417899,SAMN09418015,SAMN09418230,SAMN09418727,SAMN09418749,SAMN09419347,SAMN09420306,SAMN09420636,SAMN09420636
scientific_name	Clostridia bacterium UC5.1-1E11
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1982356849: SRR7559474,SRR7562530,SRR7568533,SRR7569582,SRR7569581,SRR7565410,SRR7568467,SRR7563015,SRR7566184,SRR7558229,SRR7566736,SRR7567699,SRR7559319,SRR7560960,SRR7569088,SRR7562157,SRR7569886,SRR7568245,SRR7566906,SRR7561255,SRR7560775,SRR7559736,SRR7558618,SRR7569310,SRR7568515,SRR7563110,SRR7559093,SRR7558938,SRR7563267,SRR7560599,SRR7559790,SRR7557126,SRR7557982,SRR7557270,SRR7562599,SRR7561735,SRR7559577,SRR7560011,SRR7558706,SRR7557778,SRR7559262,SRR7563750,SRR7569072,SRR7569071

Submission: EBI; 2021-02-01

Accession:: SAMEA7450175
ID:: 17731666

BioSample

National Center for Biotechnology Information

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