MAG Erken-D1_bin-1062 from assembly ERS4600390

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Result Filters

Identifiers: BioSample: SAMEA6951156; SRA: ERS4661033

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	2018-08-10
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
nitrogen	37.2678789436484
organic carbon	1040.73867468174
oxygen	9.01
project name	microbes in stratified freshwaters
sample name	Erken-D1_bin-1062
temperature	23.6
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:36Z
External Id	SAMEA6951156
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:36Z
INSDC status	public
Submitter Id	Erken-D1_bin-1062
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	56.44
completeness software	checkm
contamination score	2.57
geographic location (depth)	1
geographic location (latitude)	59.83638888888889
geographic location (longitude)	18.641944444444444
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__UBA964
metagenomic OTU	anoxic_mOTU_1785
metagenomic source	lake water metagenome
region	Uppsala
sample derived from	ERS4600390
sample owner	Moritz Buck
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Erken
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water