MAG AM-2014-D4_bin-429 from assembly ERS4600321

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Identifiers: BioSample: SAMEA6951021; SRA: ERS4660898

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	2014-09-05
dissolved carbon dioxide	496.9
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	6.9
nitrogen	49.9760828746243
organic carbon	1115.67185925883
oxygen	0.52
pH	4.75
project name	microbes in stratified freshwaters
sample name	AM-2014-D4_bin-429
sulfate	0.72
temperature	6.1
total phosphorus	1.71112569406325
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:34Z
External Id	SAMEA6951021
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:34Z
INSDC status	public
Submitter Id	AM-2014-D4_bin-429
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	95.83
completeness software	checkm
contamination score	3.61
ferric iron	3
ferrous iron	2.9
geographic location (depth)	3.7
geographic location (latitude)	61.20805555555556
geographic location (longitude)	25.11388888888889
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae
iron	5.9
metagenomic OTU	anoxic_mOTU_0359
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4600321
sample owner	Leyden Fernandez
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Alinen Mustajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6951021
ID:: 15262645

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MAG AM-2014-D4_bin-429 from assembly ERS4600321
MAG AM-2014-D4_bin-429 from assembly ERS4600321

biosample
RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-spl...
RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6
gi|123796822|sp|Q3TWW8.1|SRSF6_MOUS

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MAG AM-2014-D4_bin-429 from assembly ERS4600321

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