MAG MJ-2014-D2_bin-0088 from assembly ERS4600505

Identifiers: BioSample: SAMEA6950495; SRA: ERS4660373

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; environmental samples

Attributes

collection date	2014-09-05
dissolved carbon dioxide	778.3
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	28.3
nitrogen	68.5386279423419
organic carbon	2322.92872188965
oxygen	1.9
pH	5.54
project name	microbes in stratified freshwaters
sample name	MJ-2014-D2_bin-0088
sulfate	5.6
temperature	12.6
total phosphorus	0.322853904540236
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:13Z
External Id	SAMEA6950495
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:13Z
INSDC status	public
Submitter Id	MJ-2014-D2_bin-0088
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	92.19
completeness software	checkm
contamination score	2.56
ferric iron	10.6
ferrous iron	16.2
geographic location (depth)	0.55
geographic location (latitude)	61.23083333333334
geographic location (longitude)	25.142222222222223
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Hydrogenophilaceae;g__UBA3361
iron	26.8
metagenomic OTU	anoxic_mOTU_0172
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4600505
sample owner	Leyden Fernandez
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Mekkojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6950495
ID:: 15262120

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MAG MJ-2014-D2_bin-0088 from assembly ERS4600505

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