MAG KT6_bin-051 from assembly ERS4600439

Identifiers: BioSample: SAMEA6949994; SRA: ERS4659872

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	2017-09-18
dissolved carbon dioxide	982.7609349
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	2.089658549
nitrogen	53.6671735669358
organic carbon	1907.4658429567
oxygen	0.41
pH	6.967
project name	microbes in stratified freshwaters
sample name	KT6_bin-051
temperature	9.9
total phosphorus	0.443116983981474
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:06:06Z
External Id	SAMEA6949994
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:06:06Z
INSDC status	public
Submitter Id	KT6_bin-051
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	45.41
completeness software	checkm
conductivity.	0.1592
contamination score	1.47
geographic location (depth)	3.1
geographic location (latitude)	63.34916666666667
geographic location (longitude)	14.458888888888888
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae
metagenomic OTU	anoxic_mOTU_1002
metagenomic source	lake water metagenome
region	Jämtland
sample derived from	ERS4600439
sample owner	Sari Peura
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Lomtjärnan
swedish lake code	703480-142137
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6949994
ID:: 15261619

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MAG KT6_bin-051 from assembly ERS4600439

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