MAG MJ-2014-D3_bin-413 from assembly ERS4600506

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Identifiers: BioSample: SAMEA6948393; SRA: ERS4658274

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	2014-09-05
dissolved carbon dioxide	799.1
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	46.2
nitrogen	74.9641243119364
organic carbon	2672.61691658271
oxygen	0.38
pH	5.6
project name	microbes in stratified freshwaters
sample name	MJ-2014-D3_bin-413
sulfate	5.6
temperature	11
total phosphorus	0.225997733178165
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:04:46Z
External Id	SAMEA6948393
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:04:46Z
INSDC status	public
Submitter Id	MJ-2014-D3_bin-413
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	84.16
completeness software	checkm
contamination score	1.06
ferric iron	10.5
ferrous iron	16.2
geographic location (depth)	0.8
geographic location (latitude)	61.23083333333334
geographic location (longitude)	25.142222222222223
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera
iron	26.7
metagenomic OTU	anoxic_mOTU_0018
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4600506
sample owner	Leyden Fernandez
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Mekkojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6948393
ID:: 15260007

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MAG MJ-2014-D3_bin-413 from assembly ERS4600506
MAG MJ-2014-D3_bin-413 from assembly ERS4600506

biosample
MAG AM-2014-D4_bin-429 from assembly ERS4600321
MAG AM-2014-D4_bin-429 from assembly ERS4600321

biosample
RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-spl...
RecName: Full=Serine/arginine-rich splicing factor 6; AltName: Full=Pre-mRNA-splicing factor SRP55; AltName: Full=Splicing factor, arginine/serine-rich 6
gi|123796822|sp|Q3TWW8.1|SRSF6_MOUS

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MAG MJ-2014-D3_bin-413 from assembly ERS4600506

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