MAG KT3_bin-225 from assembly ERS4600436

Identifiers: BioSample: SAMEA6948260; SRA: ERS4658141

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	2017-09-18
dissolved carbon dioxide	910.6771766
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	1.017456806
nitrogen	54.9594122812654
organic carbon	1987.39457317225
oxygen	4.02
pH	6.891
project name	microbes in stratified freshwaters
sample name	KT3_bin-225
temperature	10.5
total phosphorus	0.506428634661815
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:04:45Z
External Id	SAMEA6948260
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:04:45Z
INSDC status	public
Submitter Id	KT3_bin-225
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	64.99
completeness software	checkm
conductivity.	0.1075
contamination score	3.01
geographic location (depth)	2.5
geographic location (latitude)	63.34916666666667
geographic location (longitude)	14.458888888888888
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30
metagenomic OTU	anoxic_mOTU_2201
metagenomic source	lake water metagenome
region	Jämtland
sample derived from	ERS4600436
sample owner	Sari Peura
scientific_name	uncultured proteobacterium
sequencing method	NovaSeq
site name	Lomtjärnan
swedish lake code	703480-142137
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6948260
ID:: 15259874

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MAG KT3_bin-225 from assembly ERS4600436

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