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Organizing biological data
Pseudomonas fluorescens
Lifecycle Experiment v2
RNA-Seq of Pseudomonas fluorescens SBW25 isolated from axenic rhizospheres of the barley varieties Chevallier and Tipple one and five days post-inoculation.
Life cycle experiment - whole-genome sequencing of cycle 5 evolved lineages
Pseudomonas [fluorescens] SBW25
Experimental evolution of bacterial survival on metallic copper
Pseudomonas fluorescens SBW25 genome assembly and annotation update
Plasmid Coinfection
Positive selection inhibits plasmid coinfection
Within-host PepMV nucleotide variation
Growth temperature alters the within-host competition of viral strains and differentially influences virus genetic variation
Compost spatial heterogeneity promotes evolutionary diversification of a bacterium
Compost spatial heterogeneity promotes evolutionary diversification of a bacterium. Published in Journal of Evolutionary Biology. van Houte 2020.
Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community.
Convergent transcriptional responses to acquisition and amelioration of different conjugative plasmids
SOILCOM
The impact of mercury selection and conjugative genetic elements on community structure and resistance gene transfer
Rapid plasmid compensation
Extremely fast amelioration of plasmid fitness costs by multiple functionally-diverse pathways
RNA-seq data showing the effects of rpoD mutation t1682c in Pseudomonas fluorescens
Pseudomonas [fluorescens] SBW25 Raw sequence reads
Pseudomonas fluorescens SBW25 transcriptome - SBW25c
Pseudomonas fluorescens SBW25 transcriptome - SBW25b
Pseudomonas fluorescens SBW25 transcriptome - SBW25a
Pseudomonas fluorescens SBW25 transcriptome - SBW25REc
Pseudomonas fluorescens SBW25 transcriptome - SBW25REb
Pseudomonas fluorescens SBW25 transcriptome - SBW25REa
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