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Accession: PRJNA396163 ID: 396163

Phytophthora fragariae and rubi

Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly

Investigating the genetic variation between isolates of two closely related pathogen species. More...

Accession	PRJNA396163
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Phytophthora[Taxonomy ID: 4783] Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora
Publications	Adams TM et al., "Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races.", Front Microbiol, 2020;11:490
Submission	Registration date: 4-Dec-2019 NIAB EMR
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	107655
WGS master	14
SRA Experiments	27
Protein Sequences	487734
Publications
PubMed	1
PMC	1
Other datasets
BioSample	16
Assembly	13

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

12
1
13

Assembly	Level	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_009729455.1		QWGH00000000	SAMN07449681	BC-16	Phytophthora fragariae
GCA_009732925.1		QXFW00000000	SAMN07449689	SCRP245	Phytophthora fragariae
GCA_009733125.1		QXFY00000000	SAMN07449686	NOV-77	Phytophthora fragariae
GCA_009733105.1		QXGE00000000	SAMN07449679	A4	Phytophthora fragariae
GCA_009733065.1		QXFZ00000000	SAMN07449685	NOV-71	Phytophthora fragariae
GCA_009733085.1		QXGD00000000	SAMN07449680	BC-1	Phytophthora fragariae
GCA_009733045.1		QXGC00000000	SAMN07449682	BC-23	Phytophthora fragariae
GCA_009733025.1		QXGA00000000	SAMN07449684	NOV-5	Phytophthora fragariae
GCA_009733005.1		QXFX00000000	SAMN07449688	ONT-3	Phytophthora fragariae
GCA_009732985.1		QXGB00000000	SAMN07449683	NOV-27	Phytophthora fragariae
GCA_009732945.1		QXFU00000000	SAMN07449691	SCRP324	Phytophthora rubi
GCA_009732905.1		QXFV00000000	SAMN07449690	SCRP249	Phytophthora rubi
GCA_009733145.1		QXFT00000000	SAMN07449692	SCRP333	Phytophthora rubi

SRA Data Details

Parameter	Value
Data volume, Gbases	513
Data volume, Tbytes	0.24

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Phytophthora fragariae and rubi
Phytophthora fragariae and rubi
Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly

BioProject
BioProject Links for SRA (Select 6133478) (1)
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