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Accession: PRJNA453411 ID: 453411

Gene expression and alllele inheritence in xiphophorus spontaneous melanoma in backcross BC1 interspecies animals in Xiphophorus maculatus Skin

RNA-Seq of spontaneous melanoma in Xiphophorus interspecies hybrids, and paired normal skin samples from the same melanoma-bearing animals were performed. More...
AccessionPRJNA453411; GEO: GSE113622
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismXiphophorus maculatus x Xiphophorus hellerii[Taxonomy ID: 96538]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus; Xiphophorus maculatus x Xiphophorus hellerii
Publications
  • Lu Y et al., "Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions.", Pigment Cell Melanoma Res, 2018 Jul;31(4):496-508
  • Lu Y et al., "Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.", Mol Carcinog, 2017 Aug;56(8):1935-1944
SubmissionRegistration date: 24-Apr-2018
Xiphophorus Genetic Stock Center
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments32
Publications
PubMed2
PMC2
Other datasets
BioSample32
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases135
Data volume, Mbytes62571

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