Helicobacter pylori (ID 374603) - BioProject

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Accession: PRJNA374603 ID: 374603

Helicobacter pylori

Helicobacter pylori Genome sequencing and assembly

See Genome Information for Helicobacter pylori

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The aims of this project are to identify the representative strains of a particular phylogenetic cluster and describe the features of hpSahul strains.

Accession	PRJNA374603
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Helicobacter pylori[Taxonomy ID: 210] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori
Publications	Chua EG et al., "Analysis of core protein clusters identifies candidate variable sites conferring metronidazole resistance in Helicobacter pylori.", Gastroenterol Rep (Oxf), 2019 Feb;7(1):42-49
Submission	Registration date: 12-Oct-2018 University of Western Australia

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	7519
WGS master	193
Genomic DNA	1
SRA Experiments	172
Publications
PubMed	1
PMC	1
Other datasets
BioSample	194
Assembly	194

Assembly details:

Download

Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
193
194

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_008304625.1	MVSC00000000		SAMN06329617	HPJ119	Helicobacter pylori
GCA_008304575.1	MVSP00000000		SAMN06329604	HPJ023	Helicobacter pylori
GCA_008304565.1	MVTA00000000		SAMN06329593	HP99440	Helicobacter pylori
GCA_008304545.1	MVYN00000000		SAMN06329450	HP01140	Helicobacter pylori
GCA_008304525.1	MVYM00000000		SAMN06329451	HP01193	Helicobacter pylori
GCA_008304505.1	MVYJ00000000		SAMN06329454	HP01316	Helicobacter pylori
GCA_008304485.1	MVYI00000000		SAMN06329455	HP01324	Helicobacter pylori
GCA_008304465.1	MVYE00000000		SAMN06329459	HP03127	Helicobacter pylori
GCA_008304445.1	MVTJ00000000		SAMN06329584	HP98285	Helicobacter pylori
GCA_008304425.1	MVSZ00000000		SAMN06329594	HP99511	Helicobacter pylori
GCA_008304405.1	MVSS00000000		SAMN06329601	HPJ003	Helicobacter pylori
GCA_008304385.1	MVST00000000		SAMN06329600	HPAS23	Helicobacter pylori
GCA_008304365.1	MVSQ00000000		SAMN06329603	HPJ022	Helicobacter pylori
GCA_008304335.1	MVSG00000000		SAMN06329613	HPJ098	Helicobacter pylori
GCA_008304325.1	MVSE00000000		SAMN06329615	HPJ117	Helicobacter pylori
GCA_008304295.1	MVSI00000000		SAMN06329611	HPJ057	Helicobacter pylori
GCA_008304285.1	MVSK00000000		SAMN06329609	HPJ055	Helicobacter pylori
GCA_008304265.1	MVSJ00000000		SAMN06329610	HPJ056	Helicobacter pylori
GCA_008304245.1	MVSH00000000		SAMN06329612	HPJ071	Helicobacter pylori
GCA_008304195.1	MVSB00000000		SAMN06329618	HPJ148	Helicobacter pylori
GCA_008304225.1	MVRY00000000		SAMN06329621	HPJ207	Helicobacter pylori
GCA_008304175.1	MVSA00000000		SAMN06329619	HPJ156	Helicobacter pylori
GCA_004323525.1	NYJK00000000		SAMN07540334	HP16055	Helicobacter pylori
GCA_004323545.1	NYJQ00000000		SAMN07540328	HP14012	Helicobacter pylori
GCA_004323515.1	NYJJ00000000		SAMN07540335	HP16056	Helicobacter pylori
GCA_004323445.1	NYJP00000000		SAMN07540329	HP14016	Helicobacter pylori
GCA_004323475.1	NYJE00000000		SAMN07540344	UM209	Helicobacter pylori
GCA_004323455.1	NYJN00000000		SAMN07540331	HP16042	Helicobacter pylori
GCA_004323415.1	NYJM00000000		SAMN07540332	HP16051	Helicobacter pylori
GCA_004323385.1	NYJI00000000		SAMN07540336	HP16062	Helicobacter pylori
GCA_004323355.1	NYJC00000000		SAMN07540346	UM352	Helicobacter pylori
GCA_004323375.1	NYJH00000000		SAMN07540341	UM119	Helicobacter pylori
GCA_004323335.1	NYJA00000000		SAMN07540348	UM411	Helicobacter pylori
GCA_004323315.1	NYJO00000000		SAMN07540330	HP15001	Helicobacter pylori
GCA_004323305.1	NYJL00000000		SAMN07540333	HP16052	Helicobacter pylori
GCA_004323255.1	NYJG00000000		SAMN07540342	UM139	Helicobacter pylori
GCA_004323235.1	NYJD00000000		SAMN07540345	UM211	Helicobacter pylori
GCA_004323275.1	NYJF00000000		SAMN07540343	UM152	Helicobacter pylori
GCA_004323225.1	NYJB00000000		SAMN07540347	UM370	Helicobacter pylori
GCA_003636855.2		1	SAMN06329538	HP14039	Helicobacter pylori
GCA_003635545.1	MVRZ00000000		SAMN06329620	HPJ165	Helicobacter pylori
GCA_003638625.1	MVYS00000000		SAMN06329445	HP00152	Helicobacter pylori
GCA_003638595.1	MVYL00000000		SAMN06329452	HP01234	Helicobacter pylori
GCA_003638565.1	MVYG00000000		SAMN06329457	HP02140	Helicobacter pylori
GCA_003638585.1	MVYK00000000		SAMN06329453	HP01306	Helicobacter pylori
GCA_003638525.1	MVYC00000000		SAMN06329461	HP04041	Helicobacter pylori
GCA_003638535.1	MVXZ00000000		SAMN06329464	HP04086	Helicobacter pylori
GCA_003638485.1	MVXX00000000		SAMN06329466	HP05044	Helicobacter pylori
GCA_003638465.1	MVXW00000000		SAMN06329467	HP06038	Helicobacter pylori
GCA_003638475.1	MVXS00000000		SAMN06329471	HP07019	Helicobacter pylori
GCA_003638425.1	MVXJ00000000		SAMN06329480	HP11004	Helicobacter pylori
GCA_003638415.1	MVXG00000000		SAMN06329483	HP11013	Helicobacter pylori
GCA_003638405.1	MVWZ00000000		SAMN06329490	HP11054	Helicobacter pylori
GCA_003638375.1	MVWV00000000		SAMN06329494	HP12014	Helicobacter pylori
GCA_003638355.1	MVWU00000000		SAMN06329495	HP12019	Helicobacter pylori
GCA_003638345.1	MVWT00000000		SAMN06329496	HP12020	Helicobacter pylori
GCA_003638295.1	MVYO00000000		SAMN06329449	HP01102	Helicobacter pylori
GCA_003638285.1	MVYQ00000000		SAMN06329447	HP00248	Helicobacter pylori
GCA_003638305.1	MVYP00000000		SAMN06329448	HP00260	Helicobacter pylori
GCA_003638245.1	MVYF00000000		SAMN06329458	HP03054	Helicobacter pylori
GCA_003638235.1	MVYB00000000		SAMN06329462	HP04042	Helicobacter pylori
GCA_003638225.1	MVYA00000000		SAMN06329463	HP04057	Helicobacter pylori
GCA_003638195.1	MVXY00000000		SAMN06329465	HP04087	Helicobacter pylori
GCA_003638175.1	MVXV00000000		SAMN06329468	HP06045	Helicobacter pylori
GCA_003638165.1	MVXU00000000		SAMN06329469	HP06058	Helicobacter pylori
GCA_003638135.1	MVXO00000000		SAMN06329475	HP08061	Helicobacter pylori
GCA_003638115.1	MVXF00000000		SAMN06329484	HP11020	Helicobacter pylori
GCA_003638105.1	MVXE00000000		SAMN06329485	HP11032	Helicobacter pylori
GCA_003638085.1	MVXC00000000		SAMN06329487	HP11042	Helicobacter pylori
GCA_003638055.1	MVXB00000000		SAMN06329488	HP11043	Helicobacter pylori
GCA_003638045.1	MVXA00000000		SAMN06329489	HP11049	Helicobacter pylori
GCA_003637995.1	MVWX00000000		SAMN06329492	HP11059	Helicobacter pylori
GCA_003638025.1	MVWY00000000		SAMN06329491	HP11055	Helicobacter pylori
GCA_003637965.1	MVYR00000000		SAMN06329446	HP00192	Helicobacter pylori
GCA_003637985.1	MVWS00000000		SAMN06329497	HP12036	Helicobacter pylori
GCA_003637935.1	MVYH00000000		SAMN06329456	HP01330	Helicobacter pylori
GCA_003637925.1	MVYD00000000		SAMN06329460	HP03218	Helicobacter pylori
GCA_003637885.1	MVXT00000000		SAMN06329470	HP06059	Helicobacter pylori
GCA_003637875.1	MVXR00000000		SAMN06329472	HP07036	Helicobacter pylori
GCA_003637865.1	MVXQ00000000		SAMN06329473	HP08031	Helicobacter pylori
GCA_003637835.1	MVXP00000000		SAMN06329474	HP08058	Helicobacter pylori
GCA_003637825.1	MVXN00000000		SAMN06329476	HP08072	Helicobacter pylori
GCA_003637805.1	MVXM00000000		SAMN06329477	HP08073	Helicobacter pylori
GCA_003637775.1	MVXL00000000		SAMN06329478	HP08074	Helicobacter pylori
GCA_003637755.1	MVXK00000000		SAMN06329479	HP09046	Helicobacter pylori
GCA_003637745.1	MVXI00000000		SAMN06329481	HP11005	Helicobacter pylori
GCA_003637715.1	MVXH00000000		SAMN06329482	HP11011	Helicobacter pylori
GCA_003637695.1	MVXD00000000		SAMN06329486	HP11037	Helicobacter pylori
GCA_003637685.1	MVWW00000000		SAMN06329493	HP12002	Helicobacter pylori
GCA_003637665.1	MVWR00000000		SAMN06329498	HP12038	Helicobacter pylori
GCA_003637635.1	MVWQ00000000		SAMN06329499	HP12053	Helicobacter pylori
GCA_003637625.1	MVWP00000000		SAMN06329500	HP12054	Helicobacter pylori
GCA_003637605.1	MVWO00000000		SAMN06329501	HP12059	Helicobacter pylori
GCA_003637565.1	MVWN00000000		SAMN06329502	HP12060	Helicobacter pylori
GCA_003637575.1	MVWM00000000		SAMN06329503	HP12064	Helicobacter pylori
GCA_003637545.1	MVWL00000000		SAMN06329504	HP12068	Helicobacter pylori
GCA_003637515.1	MVWK00000000		SAMN06329505	HP12069	Helicobacter pylori
GCA_003637505.1	MVWJ00000000		SAMN06329506	HP12070	Helicobacter pylori
GCA_003637485.1	MVWI00000000		SAMN06329507	HP12073	Helicobacter pylori
GCA_003637465.1	MVWH00000000		SAMN06329508	HP12077	Helicobacter pylori
GCA_003637435.1	MVWG00000000		SAMN06329509	HP12078	Helicobacter pylori
GCA_003637415.1	MVWF00000000		SAMN06329510	HP13005	Helicobacter pylori
GCA_003637405.1	MVWE00000000		SAMN06329511	HP13007	Helicobacter pylori
GCA_003637375.1	MVWC00000000		SAMN06329513	HP13011	Helicobacter pylori
GCA_003637365.1	MVWD00000000		SAMN06329512	HP13009	Helicobacter pylori
GCA_003637345.1	MVWB00000000		SAMN06329514	HP13012	Helicobacter pylori
GCA_003637305.1	MVWA00000000		SAMN06329515	HP13013	Helicobacter pylori
GCA_003637285.1	MVVY00000000		SAMN06329517	HP13022	Helicobacter pylori
GCA_003637295.1	MVVZ00000000		SAMN06329516	HP13021	Helicobacter pylori
GCA_003637265.1	MVVX00000000		SAMN06329518	HP13024	Helicobacter pylori
GCA_003637235.1	MVVW00000000		SAMN06329519	HP13025	Helicobacter pylori
GCA_003637225.1	MVVV00000000		SAMN06329520	HP13026	Helicobacter pylori
GCA_003637205.1	MVVU00000000		SAMN06329521	HP13027	Helicobacter pylori
GCA_003637175.1	MVVT00000000		SAMN06329522	HP13028	Helicobacter pylori
GCA_003637165.1	MVVS00000000		SAMN06329523	HP13029	Helicobacter pylori
GCA_003637135.1	MVVR00000000		SAMN06329524	HP13031	Helicobacter pylori
GCA_003637115.1	MVVP00000000		SAMN06329526	HP13050	Helicobacter pylori
GCA_003637105.1	MVVQ00000000		SAMN06329525	HP13033	Helicobacter pylori
GCA_003637045.1	MVVM00000000		SAMN06329529	HP13061	Helicobacter pylori
GCA_003637065.1	MVVO00000000		SAMN06329527	HP13054	Helicobacter pylori
GCA_003637055.1	MVVN00000000		SAMN06329528	HP13056	Helicobacter pylori
GCA_003637025.1	MVVL00000000		SAMN06329530	HP13063	Helicobacter pylori
GCA_003636995.1	MVVK00000000		SAMN06329531	HP13064	Helicobacter pylori
GCA_003636985.1	MVVJ00000000		SAMN06329532	HP13068	Helicobacter pylori
GCA_003636965.1	MVVI00000000		SAMN06329533	HP13072	Helicobacter pylori
GCA_003636935.1	MVVH00000000		SAMN06329534	HP14021	Helicobacter pylori
GCA_003636925.1	MVVG00000000		SAMN06329535	HP14023	Helicobacter pylori
GCA_003636905.1	MVVF00000000		SAMN06329536	HP14031	Helicobacter pylori
GCA_003636885.1	MVVE00000000		SAMN06329537	HP14036	Helicobacter pylori
GCA_003636845.1	MVVC00000000		SAMN06329539	HP14048	Helicobacter pylori
GCA_003636825.1	MVVB00000000		SAMN06329540	HP14050	Helicobacter pylori
GCA_003636805.1	MVVA00000000		SAMN06329541	HP14051	Helicobacter pylori
GCA_003636785.1	MVUZ00000000		SAMN06329542	HP14052	Helicobacter pylori
GCA_003636765.1	MVUY00000000		SAMN06329543	HP14054	Helicobacter pylori
GCA_003636745.1	MVUX00000000		SAMN06329544	HP14056	Helicobacter pylori
GCA_003636725.1	MVUW00000000		SAMN06329545	HP14065	Helicobacter pylori
GCA_003636705.1	MVUV00000000		SAMN06329546	HP14069	Helicobacter pylori
GCA_003636665.1	MVUT00000000		SAMN06329548	HP15003	Helicobacter pylori
GCA_003636675.1	MVUU00000000		SAMN06329547	HP15002	Helicobacter pylori
GCA_003636645.1	MVUS00000000		SAMN06329549	HP15004	Helicobacter pylori
GCA_003636615.1	MVUI00000000		SAMN06329559	HP15025	Helicobacter pylori
GCA_003636605.1	MVUK00000000		SAMN06329557	HP15020	Helicobacter pylori
GCA_003636585.1	MVUC00000000		SAMN06329565	HP15033	Helicobacter pylori
GCA_003636545.1	MVTT00000000		SAMN06329574	HP15054	Helicobacter pylori
GCA_003636555.1	MVTX00000000		SAMN06329570	HP15040	Helicobacter pylori
GCA_003636525.1	MVTW00000000		SAMN06329571	HP15044	Helicobacter pylori
GCA_003636505.1	MVTU00000000		SAMN06329573	HP15051	Helicobacter pylori
GCA_003636485.1	MVTO00000000		SAMN06329579	HP16001	Helicobacter pylori
GCA_003636445.1	MVTM00000000		SAMN06329581	HP16008	Helicobacter pylori
GCA_003636455.1	MVTN00000000		SAMN06329580	HP16004	Helicobacter pylori
GCA_003636415.1	MVTL00000000		SAMN06329582	HP97011	Helicobacter pylori
GCA_003636395.1	MVTK00000000		SAMN06329583	HP98123	Helicobacter pylori
GCA_003636385.1	MVTH00000000		SAMN06329586	HP98490	Helicobacter pylori
GCA_003636355.1	MVTF00000000		SAMN06329588	HP99244	Helicobacter pylori
GCA_003636335.1	MVTD00000000		SAMN06329590	HP99316	Helicobacter pylori
GCA_003636325.1	MVSW00000000		SAMN06329597	HP99648	Helicobacter pylori
GCA_003636285.1	MVSO00000000		SAMN06329605	HPJ024	Helicobacter pylori
GCA_003636275.1	MVSV00000000		SAMN06329598	HP99689	Helicobacter pylori
GCA_003636265.1	MVSN00000000		SAMN06329606	HPJ025	Helicobacter pylori
GCA_003636225.1	MVSL00000000		SAMN06329608	HPJ050	Helicobacter pylori
GCA_003636215.1	MVSD00000000		SAMN06329616	HPJ118	Helicobacter pylori
GCA_003636205.1	MVSF00000000		SAMN06329614	HPJ099	Helicobacter pylori
GCA_003636165.1	MVUR00000000		SAMN06329550	HP15005	Helicobacter pylori
GCA_003636155.1	MVUQ00000000		SAMN06329551	HP15006	Helicobacter pylori
GCA_003636145.1	MVUP00000000		SAMN06329552	HP15011	Helicobacter pylori
GCA_003636095.1	MVUN00000000		SAMN06329554	HP15013	Helicobacter pylori
GCA_003636105.1	MVUO00000000		SAMN06329553	HP15012	Helicobacter pylori
GCA_003636085.1	MVUM00000000		SAMN06329555	HP15015	Helicobacter pylori
GCA_003636065.1	MVUL00000000		SAMN06329556	HP15018	Helicobacter pylori
GCA_003636035.1	MVUH00000000		SAMN06329560	HP15026	Helicobacter pylori
GCA_003636025.1	MVUJ00000000		SAMN06329558	HP15022	Helicobacter pylori
GCA_003636005.1	MVUG00000000		SAMN06329561	HP15027	Helicobacter pylori
GCA_003635975.1	MVUE00000000		SAMN06329563	HP15031	Helicobacter pylori
GCA_003635965.1	MVUF00000000		SAMN06329562	HP15028	Helicobacter pylori
GCA_003635945.1	MVUD00000000		SAMN06329564	HP15032	Helicobacter pylori
GCA_003635915.1	MVUB00000000		SAMN06329566	HP15034	Helicobacter pylori
GCA_003635905.1	MVUA00000000		SAMN06329567	HP15035	Helicobacter pylori
GCA_003635885.1	MVTZ00000000		SAMN06329568	HP15036	Helicobacter pylori
GCA_003635855.1	MVTY00000000		SAMN06329569	HP15039	Helicobacter pylori
GCA_003635845.1	MVTV00000000		SAMN06329572	HP15050	Helicobacter pylori
GCA_003635825.1	MVTS00000000		SAMN06329575	HP15058	Helicobacter pylori
GCA_003635785.1	MVTR00000000		SAMN06329576	HP15059	Helicobacter pylori
GCA_003635795.1	MVTQ00000000		SAMN06329577	HP15060	Helicobacter pylori
GCA_003635765.1	MVTP00000000		SAMN06329578	HP15067	Helicobacter pylori
GCA_003635715.1	MVTG00000000		SAMN06329587	HP99216	Helicobacter pylori
GCA_003635735.1	MVTI00000000		SAMN06329585	HP98317	Helicobacter pylori
GCA_003635705.1	MVTE00000000		SAMN06329589	HP99255	Helicobacter pylori
GCA_003635665.1	MVTC00000000		SAMN06329591	HP99330	Helicobacter pylori
GCA_003635655.1	MVTB00000000		SAMN06329592	HP99392	Helicobacter pylori
GCA_003635645.1	MVSY00000000		SAMN06329595	HP99521	Helicobacter pylori
GCA_003635615.1	MVSX00000000		SAMN06329596	HP99647	Helicobacter pylori
GCA_003635595.1	MVSR00000000		SAMN06329602	HPJ013	Helicobacter pylori
GCA_003635585.1	MVSU00000000		SAMN06329599	HPAS14	Helicobacter pylori
GCA_003635555.1	MVSM00000000		SAMN06329607	HPJ040	Helicobacter pylori

SRA Data Details

Parameter	Value
Data volume, Gbases	45
Data volume, Mbytes	27701

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Helicobacter pylori Genome sequencing and assembly

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