Bacteria (ID 306895) - BioProject

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Accession: PRJNA306895 ID: 306895

Bacteria

BRD-relevant bacteria

Sequence the four common species of bacteria related to bovine respiratory disease

Accession	PRJNA306895
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 23-Dec-2015 University of California, Davis
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6994
WGS master	100
SRA Experiments	104
Other datasets
BioSample	104
Assembly	100

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

79
21
100

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001929895.1	LQCX00000000	SAMN04366493	0090HS	Histophilus somni
GCA_001930825.1	LQFO00000000	SAMN04366562	3260HS	Histophilus somni
GCA_001930785.1	LQFN00000000	SAMN04366561	3216HS	Histophilus somni
GCA_001930775.1	LQFM00000000	SAMN04366560	3171HS	Histophilus somni
GCA_001931095.1	LQGL00000000	SAMN04366585	3874HS	Histophilus somni
GCA_001931085.1	LQGK00000000	SAMN04366584	3849HS	Histophilus somni
GCA_001931045.1	LQGH00000000	SAMN04366581	3758HS	Histophilus somni
GCA_001931035.1	LQGG00000000	SAMN04366580	3692HS	Histophilus somni
GCA_001931025.1	LQGE00000000	SAMN04366578	3605HS	Histophilus somni
GCA_001931005.1	LQGD00000000	SAMN04366577	3570HS	Histophilus somni
GCA_001930975.1	LQGC00000000	SAMN04366576	3556HS	Histophilus somni
GCA_001931445.1	LQGJ00000000	SAMN04366583	3782HS	Histophilus somni
GCA_001931415.1	LQGI00000000	SAMN04366582	3768HS	Histophilus somni
GCA_001931405.1	LQGF00000000	SAMN04366579	3669HS	Histophilus somni
GCA_001931375.1	LQFZ00000000	SAMN04366573	3473HS	Histophilus somni
GCA_001931295.1	LQFS00000000	SAMN04366566	3275HS	Histophilus somni
GCA_001930735.1	LQFK00000000	SAMN04366558	3045MH	Mannheimia haemolytica
GCA_001930695.1	LQFI00000000	SAMN04366556	3022MH	Mannheimia haemolytica
GCA_001930685.1	LQFG00000000	SAMN04366554	2969MH	Mannheimia haemolytica
GCA_001930625.1	LQFD00000000	SAMN04366551	2930MH	Mannheimia haemolytica
GCA_001930615.1	LQEZ00000000	SAMN04366547	2887MH	Mannheimia haemolytica
GCA_001930585.1	LQEX00000000	SAMN04366545	2769MH	Mannheimia haemolytica
GCA_001930505.1	LQEP00000000	SAMN04366537	2612MH	Mannheimia haemolytica
GCA_001930475.1	LQEK00000000	SAMN04366532	2578MH	Mannheimia haemolytica
GCA_001930365.1	LQEB00000000	SAMN04366523	2436MH	Mannheimia haemolytica
GCA_001930325.1	LQDZ00000000	SAMN04366521	2428MH	Mannheimia haemolytica
GCA_001930195.1	LQDK00000000	SAMN04366506	2297MH	Mannheimia haemolytica
GCA_001930105.1	LQDO00000000	SAMN04366510	232020MH	Mannheimia haemolytica
GCA_001929885.1	LQEV00000000	SAMN04366543	2700MH	Mannheimia haemolytica
GCA_001930025.1	LQDF00000000	SAMN04366501	2190MH	Mannheimia haemolytica
GCA_001929965.1	LQDD00000000	SAMN04366499	2165MH	Mannheimia haemolytica
GCA_001929775.1	LQEU00000000	SAMN04366542	2683MH	Mannheimia haemolytica
GCA_001929715.1	LQEM00000000	SAMN04366534	2597MH	Mannheimia haemolytica
GCA_001929735.1	LQER00000000	SAMN04366539	2633MH	Mannheimia haemolytica
GCA_001929665.1	LQEJ00000000	SAMN04366531	2543MH	Mannheimia haemolytica
GCA_001929645.1	LQEG00000000	SAMN04366528	2512MH	Mannheimia haemolytica
GCA_001929455.1	LQCY00000000	SAMN04366494	2125MH	Mannheimia haemolytica
GCA_001929515.1	LQDN00000000	SAMN04366509	23209MH	Mannheimia haemolytica
GCA_001931285.1	LQFP00000000	SAMN04366563	32754MH	Mannheimia haemolytica
GCA_001931195.1	LQGQ00000000	SAMN04366590	63667MH	Mannheimia haemolytica
GCA_001931365.1	LQFX00000000	SAMN04366571	3384MH	Mannheimia haemolytica
GCA_001931345.1	LQFW00000000	SAMN04366570	3369MH	Mannheimia haemolytica
GCA_001930855.1	LQFR00000000	SAMN04366565	327518MH	Mannheimia haemolytica
GCA_001930845.1	LQFQ00000000	SAMN04366564	327511MH	Mannheimia haemolytica
GCA_001930935.1	LQGA00000000	SAMN04366574	3483MH	Mannheimia haemolytica
GCA_001929505.1	LQDM00000000	SAMN04366508	2307MB	Mycoplasmopsis bovis
GCA_001929605.1	LQED00000000	SAMN04366525	2497MB	Mycoplasmopsis bovis
GCA_001929835.1	LQFC00000000	SAMN04366550	2930MB	Mycoplasmopsis bovis
GCA_001929825.1	LQEY00000000	SAMN04366546	2887MB	Mycoplasmopsis bovis
GCA_001929955.1	LQDB00000000	SAMN04366497	2154MB	Mycoplasmopsis bovis
GCA_001929945.1	LQDA00000000	SAMN04366496	2133MB	Mycoplasmopsis bovis
GCA_001930055.1	LQDG00000000	SAMN04366502	2223MB	Mycoplasmopsis bovis
GCA_001930035.1	LQDH00000000	SAMN04366503	2255MB	Mycoplasmopsis bovis
GCA_001930175.1	LQDR00000000	SAMN04366513	2335MB	Mycoplasmopsis bovis
GCA_001930165.1	LQDJ00000000	SAMN04366505	2297MB	Mycoplasmopsis bovis
GCA_001930145.1	LQDP00000000	SAMN04366511	2320MB	Mycoplasmopsis bovis
GCA_001930315.1	LQDX00000000	SAMN04366519	2403MB	Mycoplasmopsis bovis
GCA_001930395.1	LQEF00000000	SAMN04366527	2512MB	Mycoplasmopsis bovis
GCA_001930255.1	LQDV00000000	SAMN04366517	2389MB	Mycoplasmopsis bovis
GCA_001930245.1	LQDU00000000	SAMN04366516	2377MB	Mycoplasmopsis bovis
GCA_001930225.1	LQDT00000000	SAMN04366515	2351MB	Mycoplasmopsis bovis
GCA_001930545.1	LQEW00000000	SAMN04366544	2769MB	Mycoplasmopsis bovis
GCA_001930535.1	LQEO00000000	SAMN04366536	2612MB	Mycoplasmopsis bovis
GCA_001930655.1	LQFF00000000	SAMN04366553	2969MB	Mycoplasmopsis bovis
GCA_001931315.1	LQFU00000000	SAMN04366568	3308MB	Mycoplasmopsis bovis
GCA_001931185.1	LQGP00000000	SAMN04366589	657BPM	Pasteurella multocida
GCA_001931155.1	LQGO00000000	SAMN04366588	654BPM	Pasteurella multocida
GCA_001931145.1	LQGN00000000	SAMN04366587	69APM	Pasteurella multocida
GCA_001931115.1	LQGM00000000	SAMN04366586	68BPM	Pasteurella multocida
GCA_001931265.1	LQFH00000000	SAMN04366555	2969PM	Pasteurella multocida
GCA_001931235.1	LQFB00000000	SAMN04366549	2901PM	Pasteurella multocida
GCA_001931225.1	LQGR00000000	SAMN04366591	8522APM	Pasteurella multocida
GCA_001930925.1	LQFY00000000	SAMN04366572	3384PM	Pasteurella multocida
GCA_001930895.1	LQFV00000000	SAMN04366569	3347PM	Pasteurella multocida
GCA_001930875.1	LQFT00000000	SAMN04366567	3275PM	Pasteurella multocida
GCA_001931455.1	LQGS00000000	SAMN04366592	J1APM	Pasteurella multocida
GCA_001930965.1	LQGB00000000	SAMN04366575	3483PM	Pasteurella multocida
GCA_001929595.1	LQEC00000000	SAMN04366524	2450PM	Pasteurella multocida
GCA_001929565.1	LQDY00000000	SAMN04366520	2403PM	Pasteurella multocida
GCA_001929525.1	LQDQ00000000	SAMN04366512	2320PM	Pasteurella multocida
GCA_001929465.1	LQDC00000000	SAMN04366498	2154PM	Pasteurella multocida
GCA_001929905.1	LQCZ00000000	SAMN04366495	2125PM	Pasteurella multocida
GCA_001929985.1	LQDE00000000	SAMN04366500	2165PM	Pasteurella multocida
GCA_001929855.1	LQFE00000000	SAMN04366552	2930PM	Pasteurella multocida
GCA_001929785.1	LQEQ00000000	SAMN04366538	2612PM	Pasteurella multocida
GCA_001929765.1	LQES00000000	SAMN04366540	2633PM	Pasteurella multocida
GCA_001929655.1	LQEH00000000	SAMN04366529	2512PM	Pasteurella multocida
GCA_001929705.1	LQEL00000000	SAMN04366533	2578PM	Pasteurella multocida
GCA_001930605.1	LQFA00000000	SAMN04366548	2887PM	Pasteurella multocida
GCA_001930705.1	LQFJ00000000	SAMN04366557	3022PM	Pasteurella multocida
GCA_001930765.1	LQFL00000000	SAMN04366559	3045PM	Pasteurella multocida
GCA_001930525.1	LQET00000000	SAMN04366541	2668PM	Pasteurella multocida
GCA_001930465.1	LQEN00000000	SAMN04366535	2597PM	Pasteurella multocida
GCA_001930445.1	LQEI00000000	SAMN04366530	2526PM	Pasteurella multocida
GCA_001930405.1	LQEE00000000	SAMN04366526	2497PM	Pasteurella multocida
GCA_001930385.1	LQEA00000000	SAMN04366522	2428PM	Pasteurella multocida
GCA_001930305.1	LQDS00000000	SAMN04366514	2335PM	Pasteurella multocida
GCA_001930285.1	LQDW00000000	SAMN04366518	2389PM	Pasteurella multocida
GCA_001930115.1	LQDL00000000	SAMN04366507	2297PM	Pasteurella multocida
GCA_001930065.1	LQDI00000000	SAMN04366504	2267PM	Pasteurella multocida

SRA Data Details

Parameter	Value
Data volume, Gbases	55
Data volume, Mbytes	37241

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BRD-relevant bacteria

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