Marine Bacteria (ID 478695) - BioProject

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Accession: PRJNA478695 ID: 478695

Marine Bacteria

Modular assembly of carbohydrate-degrading microbial communities in the ocean

Accession	PRJNA478695
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 30-Jun-2018 Massachusetts Institute of Technology
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	591
WGS master	161
SRA Experiments	396
Protein Sequences	26171
Other datasets
BioSample	558
Assembly	161

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

57
104
161

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_030547365.1	JAUOQY000000000	SAMN36510981	D3M06	Acinetobacter guillouiae
GCA_018860805.1	JAHKQR000000000	SAMN19350919	A3R04	Aestuariibacter sp. A3R04
GCA_030548385.1	JAUOSJ000000000	SAMN36510944	B2R03	Agarivorans sp. 1_MG-2023
GCA_030548085.1	JAUORQ000000000	SAMN36510963	C2M04	Agarivorans sp. 2_MG-2023
GCA_030547955.1	JAUORP000000000	SAMN36510964	C2M04_2	Agarivorans sp. 3_MG-2023
GCA_018860635.1	JAHKPT000000000	SAMN19350943	D2R05	Aliiglaciecola lipolytica
GCA_030549285.1	JAUORZ000000000	SAMN36510954	B3R02	Aliiglaciecola sp. 1_MG-2023
GCA_030548145.1	JAUORY000000000	SAMN36510955	B3R02_2	Aliiglaciecola sp. 2_MG-2023
GCA_030548205.1	JAUORV000000000	SAMN36510958	C1R02	Aliiglaciecola sp. 3_MG-2023
GCA_030547075.1	JAUOQH000000000	SAMN36510998	F2M13	Alteromonas sp. 1_MG-2023
GCA_030547065.1	JAUOPO000000000	SAMN36511017	G3M13	Alteromonas sp. 1_MG-2023
GCA_018860965.1	JAHKQF000000000	SAMN19350931	C1M14	Alteromonas sp. C1M14
GCA_030547325.1	JAUOQX000000000	SAMN36510982	D3M08	Alteromonas stellipolaris
GCA_030547565.1	JAUOQI000000000	SAMN36510997	F2M12	Alteromonas stellipolaris
GCA_030547865.1	JAUOQA000000000	SAMN36511005	F3M06	Alteromonas stellipolaris
GCA_030547745.1	JAUOPZ000000000	SAMN36511006	F3M13	Alteromonas stellipolaris
GCA_018860855.1	JAHKQE000000000	SAMN19350932	C1R06	Amphritea atlantica
GCA_030547545.1	JAUOQE000000000	SAMN36511001	F2R10	Amphritea sp. 1_MG-2023
GCA_030546665.1	JAUOPA000000000	SAMN36511031	I3R07	Amphritea sp. 2_MG-2023
GCA_030547345.1	JAUORD000000000	SAMN36510976	C3R10	Anaerobacillus sp. 1_MG-2023
GCA_018860365.1	JAHKPO000000000	SAMN19350948	E3M18	Arenibacter algicola
GCA_030547665.1	JAUOQW000000000	SAMN36510983	D3M17	Arenibacter palladensis
GCA_030547915.1	JAUORT000000000	SAMN36510960	C1R06_2_rep	Bacillus thuringiensis
GCA_030547405.1	JAUORE000000000	SAMN36510975	C3R06_2	Bacillus thuringiensis
GCA_030547155.1	JAUORF000000000	SAMN36510974	C3R06	Bacillus thuringiensis
GCA_018860305.1	JAHKPE000000000	SAMN19350958	G3M19	Celeribacter halophilus
GCA_030546965.1	JAUOPJ000000000	SAMN36511022	I2M02	Celeribacter halophilus
GCA_030547445.1	JAUOPY000000000	SAMN36511007	F3R18	Celeribacter halophilus
GCA_030548225.1	JAUOSA000000000	SAMN36510953	B3M18	Celeribacter halophilus
GCA_018861125.1	JAHKQN000000000	SAMN19350923	B2M06	Cellulophaga baltica
GCA_030549105.1	JAUOTD000000000	SAMN36510924	A1M10	Cellulophaga lytica
GCA_030548945.1	JAUOSM000000000	SAMN36510941	B2M06	Cellulophaga sp. 1_MG-2023
GCA_030547845.1	JAUOPT000000000	SAMN36511012	G2R05	Cellulophaga sp. 2_MG-2023
GCA_030546975.1	JAUOPS000000000	SAMN36511013	G2R07	Cellulophaga sp. 3_MG-2023
GCA_018860705.1	JAHKQA000000000	SAMN19350936	C3M06	Citreicella sp. C3M06
GCA_018860945.1	JAHKQM000000000	SAMN19350924	B2M13	Cobetia amphilecti
GCA_030549035.1	JAUOSX000000000	SAMN36510930	A2R01	Cobetia amphilecti
GCA_030547885.1	JAUORK000000000	SAMN36510969	C2R13	Cobetia amphilecti
GCA_030548825.1	JAUOSQ000000000	SAMN36510937	B1R08	Cobetia marina
GCA_030548175.1	JAUORX000000000	SAMN36510956	B3R09	Cognatishimia sp. 1_MG-2023
GCA_030548105.1	JAUORO000000000	SAMN36510965	C2M19	Colwellia sp. 1_MG-2023
GCA_030546755.1	JAUOPE000000000	SAMN36511027	I2R04	Colwellia sp. 1_MG-2023
GCA_030548055.1	JAUORN000000000	SAMN36510966	C2R07	Colwellia sp. 2_MG-2023
GCA_030547295.1	JAUORG000000000	SAMN36510973	C3R04	Colwellia sp. 3_MG-2023
GCA_030547125.1	JAUOQK000000000	SAMN36510995	F1R02	Colwellia sp. 4_MG-2023
GCA_030547795.1	JAUOPW000000000	SAMN36511009	G1M14	Colwellia sp. 5_MG-2023
GCA_030547765.1	JAUOPP000000000	SAMN36511016	G3M07	Colwellia sp. 6_MG-2023
GCA_018860915.1	JAHKQD000000000	SAMN19350933	C2M11	Colwellia sp. C2M11
GCA_018860755.1	JAHKPW000000000	SAMN19350940	D2M02	Colwellia sp. D2M02
GCA_018860585.1	JAHKPR000000000	SAMN19350945	E2M01	Colwellia sp. E2M01
GCA_030546805.1	JAUOPC000000000	SAMN36511029	I3M17	Cyclobacterium sp. 1_MG-2023
GCA_018860575.1	JAHKPQ000000000	SAMN19350946	E3M09	Gilvimarinus agarilyticus
GCA_030548285.1	JAUOSC000000000	SAMN36510951	B3M10	Gilvimarinus sp. 1_MG-2023
GCA_030547685.1	JAUOQM000000000	SAMN36510993	E3M09	Gilvimarinus sp. 2_MG-2023
GCA_030546905.1	JAUOPI000000000	SAMN36511023	I2M11	Granulosicoccaceae sp. 1_MG-2023
GCA_018860825.1	JAHKPZ000000000	SAMN19350937	C3R15	Lacinutrix sp. C3R15
GCA_018860975.1	JAHKQI000000000	SAMN19350928	B3M08	Lentibacter algarum
GCA_003318235.1	QOCG00000000	SAMN09522135	D2R18	Loktanella sp. D2R18
GCA_018860675.1	JAHKPX000000000	SAMN19350939	C3R19	Maribacter dokdonensis
GCA_030547005.1	JAUOPN000000000	SAMN36511018	G3R17	Maribacter sp. 1_MG-2023
GCA_018860765.1	JAHKPV000000000	SAMN19350941	D2M19	Marinobacter salexigens
GCA_030549045.1	JAUOST000000000	SAMN36510934	A2R20	Marinobacter sp. 1_MG-2023
GCA_030546935.1	JAUOPH000000000	SAMN36511024	I2M14	Marinobacter sp. 2_MG-2023
GCA_018860425.1	JAHKPI000000000	SAMN19350954	F3R08	Marinobacter sp. F3R08
GCA_003318275.1	QOCH00000000	SAMN09522136	F3R11	Marinobacter sp. F3R11
GCA_030548815.1	JAUOSL000000000	SAMN36510942	B2M14	Marinovum sp. 1_MG-2023
GCA_030548265.1	JAUOSD000000000	SAMN36510950	B3M03	Marinovum sp. 2_MG-2023
GCA_030547455.1	JAUOPX000000000	SAMN36511008	G1M02	Motilimonas sp. 1_MG-2023
GCA_030547185.1	JAUOQR000000000	SAMN36510988	E2M05	Neptuniibacter sp. 1_MG-2023
GCA_030547495.1	JAUOQC000000000	SAMN36511003	F2R15	Neptuniibacter sp. 2_MG-2023
GCA_030546845.1	JAUOPL000000000	SAMN36511020	I1M15	Neptunomonas phycophila
GCA_030546825.1	JAUOPG000000000	SAMN36511025	I2M16	Neptunomonas phycophila
GCA_030549025.1	JAUOSU000000000	SAMN36510933	A2R16	Neptunomonas phycophila
GCA_030547255.1	JAUORB000000000	SAMN36510978	C3R15	Oceanihabitans sp. 1_MG-2023
GCA_030547245.1	JAUOQT000000000	SAMN36510986	D3R05	Oceanihabitans sp. 2_MG-2023
GCA_030546875.1	JAUOPF000000000	SAMN36511026	I2M17	Oceanobacillus profundus
GCA_030548165.1	JAUORS000000000	SAMN36510961	C1R08	Oceanobacter sp. 5_MG-2023
GCA_030548305.1	JAUOSE000000000	SAMN36510949	B2R22	Octadecabacter sp. 1_MG-2023
GCA_018861045.1	JAHKQJ000000000	SAMN19350927	B2R22	Octadecabacter sp. B2R22
GCA_018860505.1	JAHKPU000000000	SAMN19350942	D2R04	Pacificibacter marinus
GCA_018860665.1	JAHKPK000000000	SAMN19350952	F2R14	Pacificibacter marinus
GCA_030547285.1	JAUORA000000000	SAMN36510979	D2M19_2	Pacificibacter sp. 1_MG-2023
GCA_030548045.1	JAUORM000000000	SAMN36510967	C2R07_2	Paracoccus sp. 1_MG-2023
GCA_018860625.1	JAHKQB000000000	SAMN19350935	C2R09	Paracoccus sp. C2R09
GCA_018861095.1	JAHKQP000000000	SAMN19350921	A3R12	Paraglaciecola agarilytica
GCA_018861065.1	JAHKQO000000000	SAMN19350922	A3R16	Paraglaciecola arctica
GCA_030549145.1	JAUOTC000000000	SAMN36510925	A1R05	Paraglaciecola chathamensis
GCA_030547145.1	JAUOQP000000000	SAMN36510990	E2R12	Paraglaciecola chathamensis
GCA_003318155.1	QOCE00000000	SAMN09522133	C3M10	Phaeobacter gallaeciensis
GCA_030548405.1	JAUOSI000000000	SAMN36510945	B2R04	Phaeobacter inhibens
GCA_030547825.1	JAUOPV000000000	SAMN36511010	G1M15	Photobacterium sanguinicancri
GCA_030547045.1	JAUOPU000000000	SAMN36511011	G2M05	Photobacterium sanguinicancri
GCA_030547945.1	JAUORR000000000	SAMN36510962	C2M01	Photobacterium sp. 1_MG-2023
GCA_030547675.1	JAUOQQ000000000	SAMN36510989	E2M18	Photobacterium sp. 2_MG-2023
GCA_030548365.1	JAUOSK000000000	SAMN36510943	B2M17	Polaribacter sp. 1_MG-2023
GCA_018861005.1	JAHKQL000000000	SAMN19350925	B2M17	Polaribacter vadi
GCA_018861145.1	JAHKQT000000000	SAMN19350917	A1R12	Poseidonibacter lekithochrous
GCA_030548785.1	JAUOSZ000000000	SAMN36510928	A1R12	Poseidonibacter sp. 1_MG-2023
GCA_030546765.1	JAUOPK000000000	SAMN36511021	I1R14	Pseudoalteromonas carrageenovora
GCA_030547615.1	JAUOQJ000000000	SAMN36510996	F1R06	Pseudoalteromonas carrageenovora
GCA_030548005.1	JAUORI000000000	SAMN36510971	C3M08	Pseudoalteromonas carrageenovora
GCA_030547985.1	JAUORJ000000000	SAMN36510970	C2R21	Pseudoalteromonas carrageenovora
GCA_030549055.1	JAUOTB000000000	SAMN36510926	A1R06	Pseudoalteromonas carrageenovora
GCA_030548935.1	JAUOTA000000000	SAMN36510927	A1R11	Pseudoalteromonas carrageenovora
GCA_018860845.1	JAHKQC000000000	SAMN19350934	C2R02	Pseudoalteromonas sp. C2R02
GCA_003318165.1	QOCB00000000	SAMN09522130	B3M02	Psychromonas sp. B3M02
GCA_030548245.1	JAUORW000000000	SAMN36510957	B3R15	Psychrosphaera sp. 1_MG-2023
GCA_018861025.1	JAHKQH000000000	SAMN19350929	B3R10	Psychrosphaera sp. B3R10
GCA_018860345.1	JAHKPJ000000000	SAMN19350953	F3M07	Psychrosphaera sp. F3M07
GCA_018860285.1	JAHKPC000000000	SAMN19350960	I2R16	Psychrosphaera sp. I2R16
GCA_018860475.1	JAHKPL000000000	SAMN19350951	E3R18	Reichenbachiella agariperforans
GCA_018860385.1	JAHKPH000000000	SAMN19350955	G2M07	Reinekea forsetii
GCA_018860885.1	JAHKQK000000000	SAMN19350926	B2R09	Roseovarius nubinhibens
GCA_003318255.1	QOCF00000000	SAMN09522134	A3M17	Ruegeria sp. A3M17
GCA_018860445.1	JAHKPP000000000	SAMN19350947	E3M17	Saccharophagus degradans
GCA_030546725.1	JAUOPB000000000	SAMN36511030	I3M17_2	Saccharophagus degradans
GCA_030547055.1	JAUOQV000000000	SAMN36510984	D3M17_2	Saccharophagus degradans
GCA_030547555.1	JAUOQN000000000	SAMN36510992	E3M02	Salipiger sp. 1_MG-2023
GCA_030548925.1	JAUOSP000000000	SAMN36510938	B1R10	Shewanella sp. 1_MG-2023
GCA_030548905.1	JAUOSO000000000	SAMN36510939	B1R15	Shewanella sp. 2_MG-2023
GCA_030548765.1	JAUOSH000000000	SAMN36510946	B2R08	Shewanella sp. 3_MG-2023
GCA_030548015.1	JAUORL000000000	SAMN36510968	C2R11	Shewanella sp. 4_MG-2023
GCA_030547465.1	JAUORC000000000	SAMN36510977	C3R14	Shewanella sp. 5_MG-2023
GCA_030547195.1	JAUOQU000000000	SAMN36510985	D3R04	Shewanella sp. 6_MG-2023
GCA_030547645.1	JAUOQL000000000	SAMN36510994	F1R01	Shewanella sp. 7_MG-2023
GCA_018860315.1	JAHKPF000000000	SAMN19350957	G2R14	Shimia thalassica
GCA_030547905.1	JAUOPQ000000000	SAMN36511015	G2R14	Shimia thalassica
GCA_030548885.1	JAUOSV000000000	SAMN36510932	A2R07	Shimia thalassica
GCA_030546925.1	JAUOPR000000000	SAMN36511014	G2R13	Shimia thalassica
GCA_030547525.1	JAUOQD000000000	SAMN36511002	F2R13	Shimia thalassica
GCA_030546835.1	JAUOPM000000000	SAMN36511019	I1M13	Shimia thalassica
GCA_030546685.1	JAUOOZ000000000	SAMN36511032	I3R17	Staphylococcus aureus
GCA_030548115.1	JAUORU000000000	SAMN36510959	C1R06_2	Staphylococcus aureus
GCA_030547725.1	JAUOQO000000000	SAMN36510991	E2R20	Staphylococcus pasteuri_A
GCA_018860245.1	JAHKPD000000000	SAMN19350959	I2M19	Tamlana agarivorans
GCA_030548865.1	JAUOSR000000000	SAMN36510936	B1M15	Tamlana sp. 1_MG-2023
GCA_030548465.1	JAUOSF000000000	SAMN36510948	B2R14_2	Tamlana sp. 2_MG-2023
GCA_030548345.1	JAUOSG000000000	SAMN36510947	B2R14	Tenacibaculum soleae
GCA_030549005.1	JAUOSW000000000	SAMN36510931	A2R05	Tenacibaculum soleae
GCA_030547425.1	JAUORH000000000	SAMN36510972	C3M11	Tenacibaculum sp. 1_MG-2023
GCA_030547225.1	JAUOQS000000000	SAMN36510987	D3R11	Tenacibaculum sp. 1_MG-2023
GCA_003318185.1	QOCC00000000	SAMN09522131	E3R01	Tenacibaculum sp. E3R01
GCA_030546745.1	JAUOPD000000000	SAMN36511028	I3M08	Thalassotalea sp. 1_MG-2023
GCA_018860895.1	JAHKQQ000000000	SAMN19350920	A3R06	Tritonibacter mobilis
GCA_018860465.1	JAHKPB000000000	SAMN19350961	I3M07	Vibrio cyclitrophicus
GCA_018860525.1	JAHKPM000000000	SAMN19350950	E3R11	Vibrio hepatarius
GCA_018860405.1	JAHKPG000000000	SAMN19350956	G2R10	Vibrio splendidus
GCA_030547605.1	JAUOQF000000000	SAMN36511000	F2R05	Vibrio splendidus
GCA_030547025.1	JAUOQG000000000	SAMN36510999	F2R02	Vibrio splendidus
GCA_003318175.1	QOCD00000000	SAMN09522132	C3R12	Vibrionales bacterium C3R12
GCA_030548805.1	JAUOSN000000000	SAMN36510940	B2M01	Wenyingzhuangia sp. 1_MG-2023
GCA_030548295.1	JAUOSB000000000	SAMN36510952	B3M12	Wenyingzhuangia sp. 2_MG-2023
GCA_018860565.1	JAHKPS000000000	SAMN19350944	D3R19	Winogradskyella psychrotolerans
GCA_018860545.1	JAHKPN000000000	SAMN19350949	E3R09	Winogradskyella psychrotolerans
GCA_030547355.1	JAUOQZ000000000	SAMN36510980	D2R19	Yoonia sp. 1_MG-2023
GCA_018861085.1	JAHKQS000000000	SAMN19350918	A2M03	Zobellia galactanivorans
GCA_030548985.1	JAUOSS000000000	SAMN36510935	A3M03	Zobellia galactanivorans
GCA_030549125.1	JAUOSY000000000	SAMN36510929	A2M07	Zobellia sp. 1_MG-2023
GCA_018860715.1	JAHKQG000000000	SAMN19350930	B3R18	Zobellia sp. B3R18
GCA_018860745.1	JAHKPY000000000	SAMN19350938	C3R17	Zobellia uliginosa
GCA_030547785.1	JAUOQB000000000	SAMN36511004	F3M04	Zobellia uliginosa

SRA Data Details

Parameter	Value
Data volume, Gbases	116
Data volume, Mbytes	64433

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Marine Bacteria

Modular assembly of carbohydrate-degrading microbial communities in the ocean

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